FC873788

Overview
NameFC873788
Unique NameFC873788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14123 contig Ccv1_Contig14123:921..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873788 vs. ExPASy Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.623e-28
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = -2
Query:  256 GFPTAKVACCGQGPNNGLGLCTALSNLCPNRQLYAFWDPFHPSEKATRLIVEQIFSGSTNYMTPMNLSTVM 468
            GF T+KVACCGQGP NG+GLCT LSNLCPNR L+AFWDPFHPSEKA+R+I +QI +GS  YM PMNLST++
Sbjct:  290 GFVTSKVACCGQGPYNGIGLCTPLSNLCPNRDLFAFWDPFHPSEKASRIIAQQILNGSPEYMHPMNLSTIL 360          
BLAST of FC873788 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.348e-27
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = -2
Query:  256 GFPTAKVACCGQGPNNGLGLCTALSNLCPNRQLYAFWDPFHPSEKATRLIVEQIFSGSTNYMTPMNLSTVM 468
            GF T+KVACCGQGP NG+GLCT +SNLCPNR LYAFWD FHP+EKA R+IV QI +GS+ YM PMNLST M
Sbjct:  289 GFVTSKVACCGQGPYNGIGLCTPVSNLCPNRDLYAFWDAFHPTEKANRIIVNQILTGSSKYMHPMNLSTAM 359          
BLAST of FC873788 vs. ExPASy Swiss-Prot
Match: GDL77_ARATH (GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.522e-26
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = -2
Query:  256 GFPTAKVACCGQGPNNGLGLCTALSNLCPNRQLYAFWDPFHPSEKATRLIVEQIFSGSTNYMTPMNLSTVM 468
            GF T+KVACCGQGP NG+GLCT LSNLCPNR+LY FWD FHP+EKA R+IV  I +G+T YM PMNLS+ +
Sbjct:  290 GFVTSKVACCGQGPYNGMGLCTVLSNLCPNRELYVFWDAFHPTEKANRMIVRHILTGTTKYMNPMNLSSAL 360          
BLAST of FC873788 vs. ExPASy Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.289e-25
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = -2
Query:  256 GFPTAKVACCGQGPNNGLGLCTALSNLCPNRQLYAFWDPFHPSEKATRLIVEQIFSGSTNYMTPMNLSTVM 468
            GF T+KVACCGQG  NG G+CT LS LC +R  YAFWDPFHP+EKATRLIV+QI +GS  YM PMNLST+M
Sbjct:  291 GFVTSKVACCGQGAYNGQGVCTPLSTLCSDRNAYAFWDPFHPTEKATRLIVQQIMTGSVEYMNPMNLSTIM 361          
BLAST of FC873788 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = -2
Query:  265 GFPTAKVACCGQGPNN-GLGLCTALSNLCPNRQLYAFWDPFHPSEKATRLIVEQIFSGSTNYMTPMNLS 468
            GF +A  ACCG G    G+  C   S+LC  R  Y FWDP+HPSE A  +I +Q+  G    ++P+NLS
Sbjct:  314 GFKSATKACCGNGGQYAGIIPCGPTSSLCEERDKYVFWDPYHPSEAANVIIAKQLLYGDVKVISPVNLS 382          
The following BLAST results are available for this feature:
BLAST of FC873788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GDL79_ARATH3.623e-2874.65GDSL esterase/lipase At5g33370 OS=Arabidopsis thal... [more]
LTL1_ARATH2.348e-2774.65GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]
GDL77_ARATH1.522e-2670.42GDSL esterase/lipase At5g18430 OS=Arabidopsis thal... [more]
GDL67_ARATH1.289e-2571.83GDSL esterase/lipase At4g28780 OS=Arabidopsis thal... [more]
GDL38_ARATH5.256e-1144.93GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DB04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873788 ID=FC873788; Name=FC873788; organism=Citrus clementina; type=EST; length=493bp
TTTTTTTTTTTTTTTTTTTTTAGCAAAATAATAGAAGTTGCACTTCCTCA
AACTGGATTATTCATGAAGAATCACATATAAACTTTTACAACCCATGACA
CACTGCATAAATATACAAAAGAACTGATCACAAATATACTTTTAAATCCA
TGACATTATGCATAAATAAACAAAGTAAAGCTCTCCAGATGAAGTGGTTC
AATGTATTGACAACAAAGAAGCTGCTGATCGTCAGCTGGTCAACGAATCC
AAGGCCATAACGGTGCTGAGATTCATAGGGGTCATATAGTTTGTAGAGCC
GCTAAAAATTTGTTCAACGATTAATCTGGTGGCCTTTTCCGAGGGATGGA
ATGGATCCCAGAATGCATACAGTTGCCGGTTAGGGCATAAATTCGACAGT
GCTGTGCAAAGACCAAGCCCGTTGTTCGGTCCTTGCCCACAGCATGCTAC
CTTTGCTGTAGGAAATCCTGCCAAATTAACAAAAAAAAAAAAA
back to top