FC873799

Overview
NameFC873799
Unique NameFC873799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig738 contig Ccv1_Contig738:53..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.708e-43
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 264
            FKS  EDVREEI+RKRRAGKLPGDTT+VLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKSKRK
Sbjct:  203 FKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKSKRK 290          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.708e-43
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 264
            FKS  EDVREEI+RKRRAGKLPGDTT+VLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKSKRK
Sbjct:  206 FKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKSKRK 293          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.671e-42
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 267
            FKS  EDVREEILRKRRAGKLPGDTT++LK WWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NSQ+ T LKSKRKR
Sbjct:  227 FKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQTST-LKSKRKR 314          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.047e-39
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 267
            +K    D+REEILRKRRAGKLPGDTTSVLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  + T LKSKRKR
Sbjct:  339 YKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 427          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.538e-38
Identity = 72/88 (81.82%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 264
            +K    D+REEILRKRRAGKLPGDTTSVLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T LK+KRK
Sbjct:  331 YKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKNKRK 418          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOX1_MAIZE (Homeobox protein knotted-1-like 1 (Fragment) OS=Zea mays GN=KNOX1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.844e-38
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 228
            FKS  EDVREEILRKRRAGKLPGDTTS+LK WWQ+HSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+N
Sbjct:   13 FKSRIEDVREEILRKRRAGKLPGDTTSILKQWWQEHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 88          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.844e-38
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 264
            +K    D+REEILRKRRAGKLPGDTTS LK WWQ H+KWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S TS+K+KRK
Sbjct:  279 YKEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTSVKTKRK 366          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 7.633e-38
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 264
            +K    D+REEILRKRRAGKLPGDTTSVLK+WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T  K+KR+
Sbjct:  295 YKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVSKNKRR 382          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOSB_ORYSJ (Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.788e-37
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 267
            ++    D+REEILRKRRAGKLPGDT S LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S +S KSKRKR
Sbjct:  223 YREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPASSSSDKSKRKR 311          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.788e-37
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSL-KSKRKR 267
            FK    D+REEI+RKRRAGKLPGDTTSVLK WW+ HSKWPYPTE+DKAKLV+ETGLQLKQINNWFINQRKRNW+SNS + ++L K+KRKR
Sbjct:  290 FKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSNSSTSSTLTKNKRKR 379          
The following BLAST results are available for this feature:
BLAST of FC873799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
KNAT7_ARATH2.708e-4390.91Homeobox protein knotted-1-like 7 OS=Arabidopsis t... [more]
HD1_BRANA2.708e-4390.91Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2... [more]
KNOS3_ORYSJ6.671e-4289.89Homeobox protein knotted-1-like 3 OS=Oryza sativa ... [more]
KNAP3_MALDO4.047e-3982.02Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNAT3_ARATH1.538e-3881.82Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
KNOX1_MAIZE5.844e-3892.11Homeobox protein knotted-1-like 1 (Fragment) OS=Ze... [more]
KNOSD_ORYSJ5.844e-3879.55Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNAT4_ARATH7.633e-3879.55Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
KNOSB_ORYSJ3.788e-3778.65Homeobox protein knotted-1-like 11 OS=Oryza sativa... [more]
KNAT5_ARATH3.788e-3778.89Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AE11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873799 ID=FC873799; Name=FC873799; organism=Citrus clementina; type=EST; length=678bp
TTTAAATCAAGCTTTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGAAG
GGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTGGC
AGCAACACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGCTA
GTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATCAA
CCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTTAA
AGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATCTATCTTGACGATG
AATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAATAC
ACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACATAT
CGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCCTT
GGTAGCTACTATAGAATGTAATTGATGAGATGGGATTTACATAGCTTACT
TATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAACA
GGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCAATGATT
GTAAAATGTACATGATTGATCTTTGCTGATGTTGATGATTGTAAGCTTTG
GATAGCCTAAAAAAAAAAAAAAAAAAAA
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