FC873803

Overview
NameFC873803
Unique NameFC873803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9670 contig Ccv1_Contig9670:166..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873803 vs. ExPASy Swiss-Prot
Match: Y1689_ARATH (Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 3
Query:    3 SPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVVKEGETDPLINAEKGT------GDGIAK---APAWNSNKD 299
            SPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E+QQKASETS+QLPQ +KE E DPLI AE G+      G G+ +   AP WNSNKD
Sbjct:  248 SPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIETQQKASETSTQLPQ-MKESEKDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKD 354          
The following BLAST results are available for this feature:
BLAST of FC873803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1689_ARATH1.913e-3673.15Uncharacterized membrane protein At1g06890 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DC03FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873803 ID=FC873803; Name=FC873803; organism=Citrus clementina; type=EST; length=688bp
CATCTCCAGTCACATATCAGGTCCTAGGACATCTGAAAACATGCTTGGTT
CTAGCATTTGGCTATGTTCTTCTTCATGATCCATTCAGCTGGCGCAACAT
TTTGGGTATCCTGATTGCCGTAATTGGGATGGTACTTTATTCGTATTGTT
GCAGTCTTGAGAGCCAGCAGAAGGCTAGTGAAACATCATCTCAACTGCCC
CAGGTAGTGAAGGAAGGTGAAACTGATCCTTTAATCAATGCAGAAAAAGG
AACCGGCGATGGCATTGCCAAAGCTCCAGCGTGGAATTCAAACAAGGACC
TACATGCTTGAAACTTGTCAATCATTATTCATTCACTTTTGATAAAATTC
TGTAATCTGTTCCAGTGATGAAGATGTTGCTGGTAAGAGTCACCATGTAC
GTTGATAGCAGTAGATTGGGTGTTTGGAGATTTCAACGCCAATCATATAG
TAGGTCCCAGAGACATAACGAGATGCCATTTTATATAGCAGTTTTGGATT
ATGAGTTATGAACGAATCAGGCATGAAATAGGATAATATACCAGAAGCTG
ATTTGTTAAGTGTATACTGTGTCACTATATACTGAAAGAAAAGTTTCATA
ATTGTTATTTCAGTTTAGTATGTATTTCATTCAATACTACTTGGCTAATG
AAAACCTGTGGTCTTGTACGAAAAAAAAAAAAAAAAAA
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