FC873805

Overview
NameFC873805
Unique NameFC873805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:1118..1933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.948e-76
Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1731 GFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.455e-47
Identity = 97/159 (61.01%), Postives = 117/159 (73.58%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH              S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1357 GFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.780e-36
Identity = 84/160 (52.50%), Postives = 100/160 (62.50%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1844 GFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.846e-32
Identity = 78/159 (49.06%), Postives = 95/159 (59.75%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1500 GFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.747e-28
Identity = 70/159 (44.03%), Postives = 94/159 (59.12%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            GF++VF    + I  P EL  +     E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1336 GFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.115e-22
Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 454
            GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT  SP  +  + ++   + D+++AF QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2470 GFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.958e-16
Identity = 58/159 (36.48%), Postives = 79/159 (49.69%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            GF Q+     + +F  HEL  L+ G  +  +   L  +  +  GY A    I    E+M  F+ + Q+ F +FVTG  R P  G   L P   I R     A  +ASN       + D LP+  TC N LKLPPY +KE++  KL+YAIS  +  FDLS
Sbjct:  883 GFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 1.124e-15
Identity = 57/155 (36.77%), Postives = 82/155 (52.90%), Query Frame = 2
Query:    2 GFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE + ++L+ AI+  +G
Sbjct:  736 GFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.287e-15
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = 2
Query:    2 GFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE +  +L+ AI+  +G
Sbjct:  746 GFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 51/154 (33.12%), Postives = 69/154 (44.81%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GF Q+ D   L +F   E+  L+ G     +   L  H  +  GY   SP IV   E++ EF  + +R+F +FVT   R P  G   L P   I             NG   +      LP+  TC N LKLP YSTK+ +  KL+ A+  G G
Sbjct:  888 GFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCI-----------RVNGEDETR-----LPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSGVG 1025          
The following BLAST results are available for this feature:
BLAST of FC873805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UPL3_ARATH1.948e-7688.05E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH1.455e-4761.01E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN9.780e-3652.50Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO3.846e-3249.06Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST5.747e-2844.03Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
HECD1_HUMAN2.115e-2238.16E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UPL6_ARATH2.958e-1636.48E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3A_HUMAN1.124e-1536.77Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UBE3A_MOUSE7.287e-1536.13Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
YFK7_SCHPO1.984e-1233.12Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873805 ID=FC873805; Name=FC873805; organism=Citrus clementina; type=EST; length=816bp
TGGCTTCAATCAGGTCTTTGACATCACATCATTACAAATATTTACTCCTC
ATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCG
GCGCTTGCTGAGCATATAAAATTCGATCATGGATACACTGCCAAGAGTCC
TGCAATTGTTAACTTACTAGAGATCATGGGAGAATTCACACCAGATCAGC
AGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGT
GGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTC
AACTGCACCTAATACAGCATCAAATGGAACCGGGCCTTCGGAATCAGCGG
ATGATGACTTGCCAAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCT
CCTTACTCTACCAAGGAAATTATGTACAAGAAACTGGTTTATGCAATAAG
CGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTCAAAACTAACCGAT
GGACCTTTGTATATTAATATATGTGTCATCAAGTCAATTCTCTTACCTGG
GGATTATTCATCTTTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTG
CTTTTCACTGCCCTTGTATCAATGTTCACATCATTGGCAAGTTGATTTTT
TTTGTTTCAGGTCAGACTTCAGGCTGCCACAGTGCCACACTCTCTCAACA
GAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGGCTGCTGCTAGGAC
TTTGTATATAAATAGGAAACTTAGATTTTTTTGTCTTTTTTTCCCTCATT
GACAAGTTATTGGGCT
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