FC873805
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 1.948e-76 Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 2 Query: 2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478 GFNQVFDITSLQIFTP ELD+LLCGRRELWE LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS Sbjct: 1731 GFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.455e-47 Identity = 97/159 (61.01%), Postives = 117/159 (73.58%), Query Frame = 2 Query: 2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478 GFNQVF I L+IF EL+ +LCG +L+ + +HIKFDHGYT+ SP + LL+I+ EF +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS Sbjct: 1357 GFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 9.780e-36 Identity = 84/160 (52.50%), Postives = 100/160 (62.50%), Query Frame = 2 Query: 2 GFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478 GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S A+ L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK + +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A EGQ SF LS Sbjct: 1844 GFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 3.846e-32 Identity = 78/159 (49.06%), Postives = 95/159 (59.75%), Query Frame = 2 Query: 2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478 GF+ VF TSLQ+ T HEL L E W A L + I DHGYT +SP I LL +M + +QR F QF+TG+ +LP GG A LNP LT+VR+ + P DD LPSVMTC NYLKLP YS+ E++ +L AI EGQGSF LS Sbjct: 1500 GFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.747e-28 Identity = 70/159 (44.03%), Postives = 94/159 (59.12%), Query Frame = 2 Query: 2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478 GF++VF + I P EL + E W A L ++ +HGYT S I + + I+ F ++R F QF+TG+P+LP GG LNPK T+V KH A +G +AD+ LPSVMTCANYLKLP Y++K+IM +L AI EG G+F LS Sbjct: 1336 GFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.115e-22 Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 2 Query: 2 GFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 454 GFN+VF + L F+ E+ +LCG + W + + + GYT SP + + ++ + D+++AF QF TG LPPGGLA L+P+LT+VRK +T D PSV TC +YLKLP YS++EIM ++L+ A E Sbjct: 2470 GFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.958e-16 Identity = 58/159 (36.48%), Postives = 79/159 (49.69%), Query Frame = 2 Query: 2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478 GF Q+ + +F HEL L+ G + + L + + GY A I E+M F+ + Q+ F +FVTG R P G L P I R A +ASN + D LP+ TC N LKLPPY +KE++ KL+YAIS + FDLS Sbjct: 883 GFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4) HSP 1 Score: 83.9593 bits (206), Expect = 1.124e-15 Identity = 57/155 (36.77%), Postives = 82/155 (52.90%), Query Frame = 2 Query: 2 GFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463 GF+ V + + L+ +F P E++ L+CG R L + AL E ++D GYT S I EI+ FT +Q+R F QF TG R P GGL L K+ I + T + LP+ TC N L LP YS+KE + ++L+ AI+ +G Sbjct: 736 GFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.287e-15 Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = 2 Query: 2 GFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463 GF+ V + + L+ +F P E++ L+CG R L + AL E ++D GYT +S I EI+ FT +Q+R F F TG R P GGL L K+ I + T + LP+ TC N L LP YS+KE + +L+ AI+ +G Sbjct: 746 GFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12 Identity = 51/154 (33.12%), Postives = 69/154 (44.81%), Query Frame = 2 Query: 2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463 GF Q+ D L +F E+ L+ G + L H + GY SP IV E++ EF + +R+F +FVT R P G L P I NG + LP+ TC N LKLP YSTK+ + KL+ A+ G G Sbjct: 888 GFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCI-----------RVNGEDETR-----LPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSGVG 1025 The following BLAST results are available for this feature:
BLAST of FC873805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873805 ID=FC873805; Name=FC873805; organism=Citrus clementina; type=EST; length=816bpback to top |