FC873807

Overview
NameFC873807
Unique NameFC873807
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873807_ssr350 microsatellite FC873807_ssr350:350..361. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig527 contig Ccv1_Contig527:24..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873807 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.099e-34
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 2
Query:   26 MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 289
            MKL   T+++ +L+++ SL++   AGS FCDSKC  RC +AG+ DRCLKYCGICCE+CKCVPSGTYGNKHECPCYRDK N KGK KCP
Sbjct:    1 MKLFLLTLLLVTLVITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of FC873807 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.083e-14
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 2
Query:  113 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 289
            C  KC  RC +   +  C+ +C  CC  C CVP+GTYGNK  CPCY +   K+G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of FC873807 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.667e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 2
Query:  113 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 289
            C  +C  RC     +  C+ +C  CC  C CVP G YGNK  CPCY +   ++GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of FC873807 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 2
Query:  113 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 289
            C S+C  RCK+      C+ +C  CC  C CVP G YGNK  C CY +   ++G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of FC873807 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 2
Query:  113 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 289
            C  +C +RC ++     CL+ C  CC  C CVP GT GN H CPCY       G+ KCP
Sbjct:   41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of FC873807 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 2
Query:  113 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 289
            C  +C  RC ++   + CL+ C  CC  C CVP GT GN H CPCY     + G+ KCP
Sbjct:   41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of FC873807 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 26/59 (44.07%), Postives = 31/59 (52.54%), Query Frame = 2
Query:  113 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 289
            C S C  RC+ +     C + CG CC  C CVP GTYGN  +C CY       G+ KCP
Sbjct:   40 CGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
The following BLAST results are available for this feature:
BLAST of FC873807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SNAK1_SOLTU2.099e-3468.18Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC1.083e-1449.15Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC2.667e-1345.76Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH7.760e-1345.76Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GASA2_ARATH6.569e-1244.07Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH8.579e-1244.07Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA1_ARATH9.486e-1144.07Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DC07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873807 ID=FC873807; Name=FC873807; organism=Citrus clementina; type=EST; length=454bp
GTCACTTGAAAGGTAAGCAGAAAAAATGAAGCTTCACTTTACAACTGTTG
TTGTTTGCTCTCTTATCCTCAGCTTCTCTCTCTTGGAGCCTGCCACGGCT
GGATCACCCTTTTGTGACAGCAAGTGTGCGGAAAGGTGCAAGCAAGCAGG
AGTGCAGGACCGGTGCTTGAAGTACTGCGGGATATGCTGTGAGGACTGCA
AGTGTGTGCCTTCTGGGACTTACGGAAACAAGCATGAGTGCCCTTGCTAC
AGGGACAAGGTTAACAAGAAGGGGAAGCCCAAGTGCCCTTGAATTTCGAA
ACCGCATCAAAATTCAAATGCATCTGCTTTAATTATGTTCTGTAAACAGT
ATTATTATTATTGGTAGTATTATATTATGATGGTGGTGGAATGTTAATGC
ACTTATATTATTCTTAAAAAATAGAAGCTATTTCTCTTGGTGTGAAAAAA
AAAA
back to top