FC873824

Overview
NameFC873824
Unique NameFC873824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10761 contig Ccv1_Contig10761:179..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873824 vs. ExPASy Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 2
Query:    2 AAVHINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 160
            A+V +NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +QQ
Sbjct:   30 ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82          
BLAST of FC873824 vs. ExPASy Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.366e-19
Identity = 40/53 (75.47%), Postives = 49/53 (92.45%), Query Frame = 2
Query:    2 AAVHINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 160
            A+V +NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +Q+
Sbjct:   30 ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQK 82          
BLAST of FC873824 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.151e-17
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 2
Query:    2 AAVHINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 160
            A+V INIGHVD +G+Y G+F+TFAL GF+RAQGD DSA+DRLWQK+K EV+QQ
Sbjct:   30 ASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82          
BLAST of FC873824 vs. ExPASy Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.167e-17
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 AAVHINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQ 157
            A+V INIGH+DA+G+Y G F+TFAL GFVRAQGD DS++DRLWQKKK E++Q
Sbjct:   30 ASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81          
The following BLAST results are available for this feature:
BLAST of FC873824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RS211_ARATH1.157e-1977.3640S ribosomal protein S21-1 OS=Arabidopsis thalian... [more]
RS212_ARATH3.366e-1975.4740S ribosomal protein S21-2 OS=Arabidopsis thalian... [more]
RS21_ORYSJ3.151e-1771.7040S ribosomal protein S21 OS=Oryza sativa subsp. j... [more]
RS21_MAIZE9.167e-1771.1540S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DD05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873824 ID=FC873824; Name=FC873824; organism=Citrus clementina; type=EST; length=386bp
CGCCGCTGTCCATATCAACATCGGGCACGTTGATGCTGATGGCATTTACA
CTGGCCAATTCTCCACTTTCGCTCTCTGCGGCTTCGTCCGTGCTCAGGGT
GACGGTGACAGCGCCATTGACAGGCTTTGGCAAAAGAAGAAAGTTGAGGT
CCGACAACAATAATTTTCCATTAAAGCAAGTTATGTGTCTTCTCTAGCAG
TTGTCTTCTTCTGTAAGGGTTGGAATGTGATTGCAACGATTCGTTTGTTC
TAGTTTTACTTATGTGGACCATGTTGAAATTTACTTCTGCTTTTGGACCA
TGATTAGCACTTAGTTTGTTTATCTGTCGAACTTAATATATGGTCATGAT
TTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top