FC873827

Overview
NameFC873827
Unique NameFC873827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10185 contig Ccv1_Contig10185:1..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_SOLTU (Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.400e-96
Identity = 166/197 (84.26%), Postives = 184/197 (93.40%), Query Frame = 2
Query:  221 PPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVESLRR 811
            P LNERILSS+SRRSVAAHPWHDLEIGP AP +FN VIEI KGSKVKYELDKK+GLI VDR+LYSSVVYP NYGFIPRTLCEDNDP+DVL++MQEPVLPGCFLRA+AIGLMPMIDQGEKDDKIIAVCADDPEYRHY DIK+LPPHRLAEIRRFFEDYKKNENK+VAV+DFLP + A N++Q SM+LYA+YI+ SLR+
Sbjct:   15 PRLNERILSSISRRSVAAHPWHDLEIGPEAPSVFNVVIEISKGSKVKYELDKKTGLIKVDRILYSSVVYPQNYGFIPRTLCEDNDPMDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKQLPPHRLAEIRRFFEDYKKNENKDVAVDDFLPPNSAVNAIQYSMDLYAEYILHSLRK 211          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_ORYSJ (Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. japonica GN=IPP PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 6.947e-96
Identity = 167/213 (78.40%), Postives = 188/213 (88.26%), Query Frame = 2
Query:  179 ETSSKTPVSQ--PPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVESLRR 811
            E   K P+    PPA   LNERILSSMS++ VAAHPWHDLEIGPGAP +FNCV+EI +GSKVKYELDK +GLI VDRVLYSSVVYPHNYGFIPRTLCED DP+DVL++MQE V+PGCFLRA+AIGLMPMIDQGEKDDKIIAVCADDPEYRH+ DIKE+PPHRL EIRRFFEDYKKNENKEVAVN+FLPA DA N+++ SM+LY  YI+ESLR+
Sbjct:    4 EADGKAPLGSRYPPA--ALNERILSSMSQKHVAAHPWHDLEIGPGAPAVFNCVVEIPRGSKVKYELDKATGLIKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEQVVPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPHRLQEIRRFFEDYKKNENKEVAVNEFLPAEDAINAIKYSMDLYGAYIIESLRK 214          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_ORYSI (Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. indica GN=IPP PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 6.947e-96
Identity = 167/213 (78.40%), Postives = 188/213 (88.26%), Query Frame = 2
Query:  179 ETSSKTPVSQ--PPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVESLRR 811
            E   K P+    PPA   LNERILSSMS++ VAAHPWHDLEIGPGAP +FNCV+EI +GSKVKYELDK +GLI VDRVLYSSVVYPHNYGFIPRTLCED DP+DVL++MQE V+PGCFLRA+AIGLMPMIDQGEKDDKIIAVCADDPEYRH+ DIKE+PPHRL EIRRFFEDYKKNENKEVAVN+FLPA DA N+++ SM+LY  YI+ESLR+
Sbjct:    4 EADGKAPLGSRYPPA--ALNERILSSMSQKHVAAHPWHDLEIGPGAPAVFNCVVEIPRGSKVKYELDKATGLIKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEQVVPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPHRLQEIRRFFEDYKKNENKEVAVNEFLPAEDAINAIKYSMDLYGAYIIESLRK 214          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_MAIZE (Soluble inorganic pyrophosphatase OS=Zea mays GN=IPP PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 1.003e-94
Identity = 165/211 (78.20%), Postives = 185/211 (87.68%), Query Frame = 2
Query:  179 ETSSKTPVSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVESLRR 811
            E  +     QP   P LNERILSS+SRRSVAAHPWHDLEIGP AP +FN V+EI KGSKVKYELDKK+GLI VDRVLYSSVVYPHNYGF+PRTLCEDNDP+DVL++MQEPV+PG FLRA+AIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDI EL PHRL EI+RFFEDYKKNENKEVAV+ FLPA+ A  ++Q SM+LYA YI++SLR+
Sbjct:    4 EDKTAASAEQPKRAPKLNERILSSLSRRSVAAHPWHDLEIGPDAPAVFNVVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFVPRTLCEDNDPMDVLVLMQEPVVPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDISELSPHRLQEIKRFFEDYKKNENKEVAVDAFLPATTAREAIQYSMDLYAQYILQSLRQ 214          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR2_ARATH (Soluble inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=PPA2 PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 1.313e-86
Identity = 150/195 (76.92%), Postives = 170/195 (87.18%), Query Frame = 2
Query:  227 LNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVESLRR 811
            LNER  ++ + RS AAHPWHDLEIGP AP +FNCV+EI KG KVKYELDK SGLI VDRVLYSS+VYPHNYGFIPRT+CED+DP+DVL++MQEPVL G FLRA+AIGLMPMIDQGEKDDKIIAVCADDPE+RHY DIKELPPHRLAEIRRFFEDYKKNENK+V V  FLPA  A ++++ SM+LYA YI   L+R
Sbjct:   24 LNERNFAAFTHRSAAAHPWHDLEIGPEAPTVFNCVVEISKGGKVKYELDKNSGLIKVDRVLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLTGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFEDYKKNENKKVDVEAFLPAQAAIDAIKDSMDLYAAYIKAGLQR 218          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_HORVD (Soluble inorganic pyrophosphatase OS=Hordeum vulgare var. distichum GN=IPP PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.476e-85
Identity = 157/209 (75.12%), Postives = 180/209 (86.12%), Query Frame = 2
Query:  185 SSKTPVSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVESLRR 811
            +++ P S+P   P LNERILSS+SRR   AHPWHDLEIGPGAP +FN V+EI KGSKVKYELDKK+GLI VDRVLYSSVVYPHNYGFIPRTLCEDNDP+DVL++MQEPV+PG FLRA+AIGLMPMIDQGEKDDKIIAVCADDPEYRHY+    L P RL EI+R  EDYKKNENKEVAV+ FLPA+ A  ++Q SM+LYA YI++SLR+
Sbjct:   11 AAQQPTSRPA--PKLNERILSSLSRRGGGAHPWHDLEIGPGAPAVFNVVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVIPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYSTSVSLLP-RLQEIKR-LEDYKKNENKEVAVDAFLPATTAREAIQYSMDLYAQYILQSLRQ 215          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR2_CHLRE (Soluble inorganic pyrophosphatase 2 OS=Chlamydomonas reinhardtii GN=ppa2 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.472e-71
Identity = 123/179 (68.72%), Postives = 149/179 (83.24%), Query Frame = 2
Query:  260 RSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIV 796
            R  A+HPWHDL  G  AP   +CVIEI +GSKVKYELDK +GL  VDR+LYSSVVYPHNYGF+P+TLCED DPLDVL++MQEPV+P CFLRAK IG+M M+DQGE+DDK+IAV ADDPEY+ + DI +LPPHRLAEI+RFFEDYKKNE+KEV V+DFL A +A   V+ S+N+Y ++ V
Sbjct:    5 RGTASHPWHDLHPGNDAPNFVSCVIEIPRGSKVKYELDKDTGLCFVDRILYSSVVYPHNYGFVPKTLCEDGDPLDVLVLMQEPVVPMCFLRAKPIGVMQMLDQGERDDKLIAVHADDPEYKGFTDISQLPPHRLAEIKRFFEDYKKNEHKEVVVDDFLGAEEAKKVVKDSLNMYQEHYV 183          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_LEPIN (Inorganic pyrophosphatase OS=Leptospira interrogans GN=ppa PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.087e-48
Identity = 92/169 (54.44%), Postives = 118/169 (69.82%), Query Frame = 2
Query:  275 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLY 781
            HPWHD+  G   P+I N VIEI +GS+ KYE+DK+ G++ +DRVLYSS  YP NYGFIP++ C D DPLD+L++ Q  + P C ++AK IG+M M+D GE+DDKIIAV A+D    H NDI ELPPH   E++ FFEDYKK ENK V + +F  A  A   V  S+ LY
Sbjct:    3 HPWHDISPGDQNPEIVNGVIEIKRGSRAKYEVDKEYGILKLDRVLYSSFYYPANYGFIPQSYCGDQDPLDILVLSQVELEPLCLVKAKVIGVMRMLDSGEEDDKIIAVAANDMSVNHINDISELPPHFTLELKHFFEDYKKLENKTVVIEEFQNAILARKIVLDSLELY 171          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_LEPIC (Inorganic pyrophosphatase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ppa PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.087e-48
Identity = 92/169 (54.44%), Postives = 118/169 (69.82%), Query Frame = 2
Query:  275 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLY 781
            HPWHD+  G   P+I N VIEI +GS+ KYE+DK+ G++ +DRVLYSS  YP NYGFIP++ C D DPLD+L++ Q  + P C ++AK IG+M M+D GE+DDKIIAV A+D    H NDI ELPPH   E++ FFEDYKK ENK V + +F  A  A   V  S+ LY
Sbjct:    3 HPWHDISPGDQNPEIVNGVIEIKRGSRAKYEVDKEYGILKLDRVLYSSFYYPANYGFIPQSYCGDQDPLDILVLSQVELEPLCLVKAKVIGVMRMLDSGEEDDKIIAVAANDMSVNHINDISELPPHFTLELKHFFEDYKKLENKTVVIEEFQNAILARKIVLDSLELY 171          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_METTH (Inorganic pyrophosphatase OS=Methanobacterium thermoautotrophicum GN=ppa PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.866e-41
Identity = 80/173 (46.24%), Postives = 108/173 (62.43%), Query Frame = 2
Query:  281 WHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVE 799
            W D+E GP  P++   V+EI KGS+ KYE  K      +DRVLYS+V YP  YG IPRTL +D DP+D+L++M EP  PGC + ++ IGL+ MID G++DDKI+AV   DP +    DI ++P H L EI  FFE YKK E K+     +  A  A+ +V  S+ LY    +E
Sbjct:    4 WKDIEPGPSVPEVVYAVVEIPKGSRNKYEYHKDLQAFALDRVLYSAVFYPAEYGIIPRTLYDDGDPMDILVLMDEPTFPGCIIESRPIGLLRMIDGGDQDDKILAVPVADPHFADVKDISDIPEHNLKEIANFFETYKKLEGKKTETLGWEGAEKAFEAVNHSIELYRKKYME 176          
The following BLAST results are available for this feature:
BLAST of FC873827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
IPYR_SOLTU1.400e-9684.26Soluble inorganic pyrophosphatase OS=Solanum tuber... [more]
IPYR_ORYSJ6.947e-9678.40Soluble inorganic pyrophosphatase OS=Oryza sativa ... [more]
IPYR_ORYSI6.947e-9678.40Soluble inorganic pyrophosphatase OS=Oryza sativa ... [more]
IPYR_MAIZE1.003e-9478.20Soluble inorganic pyrophosphatase OS=Zea mays GN=I... [more]
IPYR2_ARATH1.313e-8676.92Soluble inorganic pyrophosphatase 2 OS=Arabidopsis... [more]
IPYR_HORVD2.476e-8575.12Soluble inorganic pyrophosphatase OS=Hordeum vulga... [more]
IPYR2_CHLRE3.472e-7168.72Soluble inorganic pyrophosphatase 2 OS=Chlamydomon... [more]
IPYR_LEPIN1.087e-4854.44Inorganic pyrophosphatase OS=Leptospira interrogan... [more]
IPYR_LEPIC1.087e-4854.44Inorganic pyrophosphatase OS=Leptospira interrogan... [more]
IPYR_METTH2.866e-4146.24Inorganic pyrophosphatase OS=Methanobacterium ther... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DD08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873827 ID=FC873827; Name=FC873827; organism=Citrus clementina; type=EST; length=856bp
TCTCTTGCTTTCCTCTACTTAAGCGCCCGTAGAGGAACTTAACTTTAATA
TCTTCGCCATTACGCCTCTCTCTTTTCGAGATCGGTGCGTTTCTTTGTGG
TCTTGAAGCTTCGTTCTCGTTAGGCCCTGTTTGGCTTTCAGTACTTGAAC
CGTTACGGTTATGATGGCTCCACCAATTGAGACTTCAAGCAAAACTCCTG
TCTCCCAACCTCCAGCACATCCTCCGCTTAACGAAAGGATACTTTCTTCA
ATGAGCAGGAGGTCTGTTGCTGCACATCCTTGGCATGATCTTGAGATTGG
ACCTGGAGCTCCAAAGATTTTCAATTGCGTGATTGAAATTGGGAAAGGGA
GCAAGGTGAAATATGAACTTGACAAAAAATCTGGACTGATCATGGTTGAT
CGTGTTCTTTACTCTTCAGTTGTGTACCCCCATAACTATGGTTTCATACC
TCGTACTCTTTGCGAAGACAATGATCCCCTTGATGTCCTGATCATCATGC
AGGAGCCAGTTCTTCCAGGCTGCTTTCTTCGGGCTAAAGCCATTGGACTC
ATGCCTATGATTGATCAGGGTGAGAAAGATGATAAGATCATTGCTGTCTG
TGCTGATGATCCCGAGTACCGACACTACAATGACATTAAGGAGCTTCCAC
CACATCGTTTGGCTGAGATCCGCCGCTTCTTTGAAGACTACAAGAAAAAT
GAGAACAAGGAAGTTGCTGTAAATGACTTTCTGCCAGCCTCTGATGCCTA
TAATTCAGTCCAGCAGTCTATGAACCTCTATGCTGACTATATTGTGGAGA
GCTTGAGGCGGTAGTCGTTTGATCACCTGAGTGATAGATTCCGGCCGTGT
GATGTT
back to top