FC873832

Overview
NameFC873832
Unique NameFC873832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873832_ssr299 microsatellite FC873832_ssr299:299..310. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14866 contig Ccv1_Contig14866:13..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.227e-19
Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 392
            MKVIAA+LLA+LGGN +P+ +DL++IL SVGA+ADD++IE LLS+VKGKDITELIASGRE+L                                        D+++GFSLFD
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSEEESDEELGFSLFD 112          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.093e-19
Identity = 46/62 (74.19%), Postives = 59/62 (95.16%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MKVIAAYLLAVLGGN +P+ADD+++IL SVGAEAD+E++EFLL+E+K KDITE+IA+GRE+L
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 6.090e-19
Identity = 54/112 (48.21%), Postives = 62/112 (55.36%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 392
            MK +AAYLLAVL GNA+PSADDL  IL SVG E D+E++E LLS++ GKDITELIA+GREK                                         DDDMGFSLFD
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.357e-18
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MKV AA+LLAVLGGNANPSAD++++I+G+VGA+ D E IE LL EV GKDI ELIASGREKL
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.559e-17
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MKV+AAYLLAVL G A+P++ D++ ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MKV+AA+LLAVL G A+P+  D+++ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            M+ +AAYLLAVLGGNANPSA D++ ILGSVG +A+DER+  ++ E+KGKDI E++A+GR KL
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA23_ARATH (60S acidic ribosomal protein P2-3 OS=Arabidopsis thaliana GN=RPP2C PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MKVIAA+LLA LGGN NP+++DL+ IL SVGAE D+ +I+ L S +K  D+TELIA+GREK+
Sbjct:    1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKM 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MK +AAYLL  LGGN +PSA D++ +L SVG EAD +R++ L+SE++GKDI ELIASG EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA25_ARATH (60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana GN=RPP2E PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MKV+AAYLLA L GN NPS  DL+ I+ SVGAE D E+I+   S +K +D+TELIA GREK+
Sbjct:    1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKM 62          
The following BLAST results are available for this feature:
BLAST of FC873832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA2_PARAR1.227e-1947.3260S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2B_MAIZE2.093e-1974.1960S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA2A_MAIZE6.090e-1948.2160S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA24_ARATH1.357e-1874.1960S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA22_ARATH2.559e-1769.3560S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA21_ARATH5.700e-1767.7460S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA2_BRAFL2.829e-1664.5260S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA23_ARATH9.100e-1562.9060S acidic ribosomal protein P2-3 OS=Arabidopsis t... [more]
RLA2_ALTAL5.898e-1462.9060S acidic ribosomal protein P2 OS=Alternaria alte... [more]
RLA25_ARATH5.898e-1461.2960S acidic ribosomal protein P2-5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AG02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873832 ID=FC873832; Name=FC873832; organism=Citrus clementina; type=EST; length=595bp
CTCTTATTGTTCACATTGTCGATCTTTATCGTCTCACCTCTCTGCTATAA
GCAAAAATGAAGGTGATCGCTGCTTATTTGCTCGCCGTTTTGGGTGGCAA
CGCCAACCCATCGGCCGATGACTTGCAGAACATTCTTGGATCAGTTGGAG
CTGAAGCTGATGATGAGAGAATAGAGTTTCTCTTATCAGAAGTCAAGGGC
AAGGATATTACCGAGCTAATTGCATCCGGAAGGGAGAAGTTGGCATCAGT
GCCATCAGGTGGTGGTGTTGCTGTTGCTGCAGCAGCACCTGCTGCAGGTG
CTGCTGCTGCTCCTGCTGCTGAGGCTAAGAAAGAGGAGAAGGTCGAGGAG
AAGGAAGAATCTGATGATGACATGGGTTTCAGCCTTTTCGACTAAGCTCT
CAATGTTGCTTTTTCTGTATGAAGGATTATTATATTTGGTCATTAGTGTT
TTTATTTGATTGTTACAAGTTTTTGGTTTGTAGTTGGATATGGTTTTCCC
ATTTTAGAGATTGTTTGAACTCTTGGAAGTTTTGTTTAGTTAATGAGGTG
AAATCAACATTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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