FC873834

Overview
NameFC873834
Unique NameFC873834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10187 contig Ccv1_Contig10187:1..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873834 vs. ExPASy Swiss-Prot
Match: CTR2_RAT (Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.593e-12
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 3
Query:   12 LLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS 242
            L+LC  ++LT   Q + +        FM PF+P LP   IL+N+YL++ L + TW R S+W+++G L+Y  YG  HS
Sbjct:  533 LVLCAAVILTIWRQPQNQQKVA----FMVPFLPFLPAFSILVNIYLMVQLSADTWVRFSIWMVLGFLIYFAYGIRHS 605          
BLAST of FC873834 vs. ExPASy Swiss-Prot
Match: CTR2_MOUSE (Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 3
Query:   12 LLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS 242
            L+LC  ++LT   Q + +        FM PF+P LP   IL+N+YL++ L + TW R S+W+ +G L+Y  YG  HS
Sbjct:  533 LVLCAAVILTIWRQPQNQQKVA----FMVPFLPFLPAFSILVNIYLMVQLSADTWIRFSIWMALGFLIYFAYGIRHS 605          
BLAST of FC873834 vs. ExPASy Swiss-Prot
Match: CTR2_PIG (Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 3
Query:   12 LLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS 242
            L+LC  +VLT   Q + +        FM PF+P LP   IL+N+YL++ L + TW R S+W+ +G L+Y  YG  HS
Sbjct:  533 LVLCVAVVLTIWRQPQNQQKVA----FMVPFLPFLPAFSILVNIYLMVQLSADTWIRFSIWMALGFLIYFAYGIRHS 605          
BLAST of FC873834 vs. ExPASy Swiss-Prot
Match: CTR1_HUMAN (High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 3
Query:    6 GALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS 242
            G+ LLC ++      Q E++        F  PF+P+LPI  I +NVYL++ L   TW R +VW++IG ++Y  YG  HS
Sbjct:  534 GSALLCAVVTGVIWRQPESKTKLS----FKVPFLPVLPILSIFVNVYLMMQLDQGTWVRFAVWMLIGFIIYFGYGLWHS 608          
BLAST of FC873834 vs. ExPASy Swiss-Prot
Match: CTR1_MOUSE (High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 3
Query:    6 GALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS 242
            G++LLC L+      Q E++        F  PFVP+LP+  I +N+YL++ L   TW R +VW++IG  +Y  YG  HS
Sbjct:  527 GSVLLCMLVTGIIWRQPESKTKLS----FKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVWMLIGFTIYFGYGIWHS 601          
The following BLAST results are available for this feature:
BLAST of FC873834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CTR2_RAT2.593e-1240.26Low affinity cationic amino acid transporter 2 OS=... [more]
CTR2_MOUSE9.855e-1240.26Low affinity cationic amino acid transporter 2 OS=... [more]
CTR2_PIG1.681e-1141.56Low affinity cationic amino acid transporter 2 OS=... [more]
CTR1_HUMAN4.891e-1139.24High affinity cationic amino acid transporter 1 OS... [more]
CTR1_MOUSE8.343e-1139.24High affinity cationic amino acid transporter 1 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2AG04FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873834 ID=FC873834; Name=FC873834; organism=Citrus clementina; type=EST; length=607bp
TAGGTGGTGCTCTTCTTCTATGTGGTCTGATTGTTCTGACCTCTATAAAT
CAAGATGAGGCCAGACATAATTTTGGGCATGCAGGAGGTTTCATGTGCCC
ATTTGTTCCACTGCTGCCTATTGCTTGCATACTTATCAATGTCTACTTAC
TGATTAATCTGGGATCTGCCACCTGGGCACGTGTTTCAGTTTGGCTTATC
ATTGGAGTTCTTGTTTATGTATTTTATGGCCGCACCCACAGCTCATTGCT
GGATGCAGTCTATGTCCCTGCGGCTCGTGTTGATGAAATATACCGTAGTT
CTCGAGATTCTCTCCCTGCAACTCATGTGGATGGAACTTACTGCAGGTCT
CAAGATACTTTGCTGGCTTAGTTGTTTTAGGTAGCCTGTAAGCTAAACTA
GCTTTACAGAAGATCTCCCCTGAAACTTCCCTTGCAAATACTTGTAATAT
TATTGTGGCTGGGCTGATGAGTTGAATTCAGCCTCGCGTTTGTATAGTAT
CCATTGGTGGTCATCATTAGTTTAATGGCCTGGGGACCAGAAACAGTGTA
AATAATTTTCCAATTGAATGATAAATTTCTTTCTCCAGCAAAAAAAAAAA
AAAAAAA
back to top