FC873841

Overview
NameFC873841
Unique NameFC873841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1154 contig Ccv1_Contig1154:3..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873841 vs. ExPASy Swiss-Prot
Match: C3H24_ARATH (Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.254e-26
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 YISCIPETLVANAIELCTPSPDKIEK-NKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLER 240
            YISC PETLVANAIELCTPS D+ ++ NK+ RG + +  A LARHRAKSMP S+ F+PVKAMAVDLFPHT HCEMVMLLER
Sbjct:  729 YISCNPETLVANAIELCTPSFDEPDRGNKNYRGRKKIGIAALARHRAKSMPTSEAFRPVKAMAVDLFPHTDHCEMVMLLER 809
The following BLAST results are available for this feature:
BLAST of FC873841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C3H24_ARATH3.254e-2674.07Zinc finger CCCH domain-containing protein 24 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2AG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873841 ID=FC873841; Name=FC873841; organism=Citrus clementina; type=EST; length=829bp
TACATATCATGTATCCCTGAAACCTTAGTAGCAAATGCTATTGAGCTTTG
CACACCGTCTCCAGATAAAATTGAGAAAAATAAAGACAACAGGGGGTGGA
GGAACATGAGCAGTGCTGGTTTGGCCAGGCATAGAGCCAAATCCATGCCC
ATATCAAAGCCTTTCCAACCTGTAAAAGCCATGGCAGTGGATCTTTTCCC
ACATACTTCGCACTGTGAAATGGTGATGCTCTTGGAGAGGTAATTAGACC
ATAACTCAAGATGCCACAATTTTGCCATGCAGCCAACTCCAATTTGAACG
TTTGAAGGATTCTTATGTCTGCCAATAAAAATTTTAATAGTTACAGCTTG
TCGTCCATTCTTTGGTCGTAATTGTTGTATTGATTCGAGAACACAAGGAA
CTGTTGAATGGTCGGCGGAATTCTCATAACTGTTTTTTGGCCTTACCAAT
TACAATTCAAAGAGACTTACTGAGAAAATACTACATTAGAGTCAGTGTCT
GCTGCGGCCCCCGGACCTCTAGTTGGAAACCCCAAGTTTTCAGTTGCACT
CTTAATTTTTCAGTTGGAGACCCCCCCAGCGTGGGCGTTGTACAACAGAA
ATATGGAGTTTGGAAAAAAAGGAATAAAAATAAAAAATAAAAAATGGGTT
TGGACCGGAAAGTGTAGATGACTATAATTGTTGATAGCGGTTGTATTCTA
GCCCAACCTAGATGAATGAACTCTTGACACGGCTCCAATCGAAGTTGAGA
GTTGAGACCCTTGGCCCAACTAATCATCTGCTGACAGGTGAATTTAGCCA
TTACTGAAAGGGATCCACCCTCACCTGGA
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