FC873856

Overview
NameFC873856
Unique NameFC873856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig113 contig Ccv1_Contig113:215..1011. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873856 vs. ExPASy Swiss-Prot
Match: NCKP1_ARATH (Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2)

HSP 1 Score: 387.882 bits (995), Expect = 3.500e-107
Identity = 195/267 (73.03%), Postives = 225/267 (84.27%), Query Frame = 1
Query:    1 SLRSNREVLEAIAGSMHSGDRIEREACLKQIVDLDTLIGFCIEAGQALAFDNXXXXXXXXXXXXXXPLIHSLLAGVVKHIPQGIPEKKEIRRMKGVANSVGVVVDHDSEWVRSILEEVGGANDDSWSLLPYLFAIFITSNIWNTTGFNVETGGFNNNIHCLARCISAVIAGREYVKLQREHQQR-QSFSNS-HDSETLDSEIQSRVSAEASIKSAMQVFVKFAAGVVLDSWNEATRSHLVAKLIFLDQLSEISSFLPRTSLEPYVPY 795
            SLRSNRE++EA A SMHSGDR+ER+A ++QIVDLDT+IGFCIEAGQALAFD+               LIHS+++G+V+HIP+ IPEKKEIRR+KGVAN VGV  DHDSEWVR ILEEVGGAND+SWSLLPY FA F+TSN WNTTGFN+ETGGF+NNIHCLARCISAVIAG EYV+LQRE+QQ+ QS SN  H SE LDSE   RV+AEASIKS+M +FVKFAA +VLDSW+EA RSHLVAKLIFLDQL EIS +LPR+SLE +VPY
Sbjct: 1016 SLRSNRELIEAAAASMHSGDRVERDASVRQIVDLDTVIGFCIEAGQALAFDDLLAEASGAVLEDNASLIHSMISGIVEHIPEEIPEKKEIRRIKGVANGVGVAGDHDSEWVRLILEEVGGANDNSWSLLPYFFASFMTSNAWNTTGFNIETGGFSNNIHCLARCISAVIAGSEYVRLQREYQQQHQSLSNGHHSSENLDSEFPPRVTAEASIKSSMLLFVKFAASIVLDSWSEANRSHLVAKLIFLDQLCEISPYLPRSSLESHVPY 1282          
BLAST of FC873856 vs. ExPASy Swiss-Prot
Match: NCKP1_ORYSJ (Probable protein NAP1 OS=Oryza sativa subsp. japonica GN=NAP1 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.765e-85
Identity = 150/265 (56.60%), Postives = 204/265 (76.98%), Query Frame = 1
Query:    1 SLRSNREVLEAIAGSMHSGDRIEREACLKQIVDLDTLIGFCIEAGQALAFDNXXXXXXXXXXXXXXPLIHSLLAGVVKHIPQGIPEKKEIRRMKGVANSVGVVVDHDSEWVRSILEEVGGANDDSWSLLPYLFAIFITSNIWNTTGFNVETGGFNNNIHCLARCISAVIAGREYVKLQREHQQRQSFSNSHDSETLDSEIQSRVSAEASIKSAMQVFVKFAAGVVLDSWNEATRSHLVAKLIFLDQLSEISSFLPRTSLEPYVPY 795
            +LRSNR+ LE +AGS++SGDRIER+A LKQI+D++TL  FCI+AGQA+ F                PLI+SLL G+   +P+ +P+K EI R++ VA+SVGV   HD+EWV SIL E+G AND+SW+LLPYL A F+ SN+W+TT ++V TGGF+NN+HCLARC+SAV+ G EY +++REH +R S SN H  E  + E+ SRVSAEA+IKSAMQ++VK +AG+VLDSWN+ +R ++V KLIFLDQL E+S +LPR++LE ++PY
Sbjct:  966 ALRSNRDALEGLAGSVNSGDRIERDANLKQIIDIETLADFCIQAGQAITFRRLLVEAVGAVLEEKVPLIYSLLKGLAMQLPEEVPDKNEIIRLRRVASSVGVGDKHDAEWVHSILAEIGSANDNSWTLLPYLCAAFMASNMWSTTAYDVNTGGFSNNLHCLARCVSAVVGGSEYTRMEREH-RRSSLSNGHMDELQEPELLSRVSAEANIKSAMQLYVKLSAGLVLDSWNDTSRPYIVPKLIFLDQLCEMSPYLPRSTLEVHIPY 1229          
The following BLAST results are available for this feature:
BLAST of FC873856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCKP1_ARATH3.500e-10773.03Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 ... [more]
NCKP1_ORYSJ3.765e-8556.60Probable protein NAP1 OS=Oryza sativa subsp. japon... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2AH05FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873856 ID=FC873856; Name=FC873856; organism=Citrus clementina; type=EST; length=797bp
TCATTACGGTCAAACCGTGAGGTATTAGAGGCAATTGCTGGCAGCATGCA
TTCAGGTGACAGAATAGAAAGAGAGGCATGTTTGAAGCAGATTGTGGATT
TGGACACGTTAATTGGATTCTGTATTGAAGCAGGGCAGGCATTGGCTTTT
GATAACCTTCTTGCTGAAGCAGCTGGAGCCATTCTTGAAGAAGGTGCCCC
GTTAATACACTCGTTACTAGCCGGGGTAGTTAAGCACATACCTCAAGGAA
TACCTGAAAAGAAGGAAATCAGGAGGATGAAAGGGGTGGCTAACAGTGTT
GGTGTGGTTGTCGATCATGATTCTGAGTGGGTAAGATCAATTTTGGAAGA
GGTTGGAGGTGCAAATGATGATTCATGGAGCTTGTTGCCTTACCTATTTG
CAATCTTCATAACGTCCAACATTTGGAACACTACTGGCTTCAATGTTGAG
ACTGGGGGCTTCAACAACAATATCCATTGCTTGGCAAGATGCATTAGTGC
TGTAATTGCAGGACGTGAATATGTTAAATTGCAACGTGAACATCAACAGA
GGCAGTCTTTTTCAAATAGCCATGACAGTGAGACTTTGGATTCTGAAATA
CAAAGCCGTGTTTCTGCAGAAGCCAGCATTAAATCTGCAATGCAGGTCTT
TGTCAAATTTGCTGCCGGAGTAGTTCTAGATTCGTGGAATGAAGCTACAA
GATCTCACCTTGTCGCCAAGCTTATATTTCTGGACCAACTCTCTGAGATA
TCATCATTCCTTCCAAGAACTTCTCTTGAACCCTATGTTCCCTATGC
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