FC873860

Overview
NameFC873860
Unique NameFC873860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10188 contig Ccv1_Contig10188:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA12_ARATH (Putative calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.740e-85
Identity = 166/263 (63.12%), Postives = 200/263 (76.05%), Query Frame = 2
Query:    5 IPRYNCSTLLINVTTSTLTKAQKRWRLAYWTIYSFRAMLSVLPKGRLLSAEILTSHDYIALDVEPEPSSSHDEANKLVSNSIDPDMDGIRLAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            +  Y+ S LL+N+TTS+L KAQ+RWR AY  IYS RAMLS++ +      +  TS   ++L      S    + N +  + + P +D  +L E++K KD   +  LGGVEGVA +L TNP  GI+GN+++VSRR  LFG+NTYHKPPPKGLL FV EAFKD TILILLVCA  SLGFGIKEHG +EGWYEGGSIFVAVFLVIVVSA SNFRQ RQFDKLSKISNNIKVEV+R++RR  ISIFD+VVGD+VFLKIGD+IPADGL
Sbjct:    4 LKEYDYSALLLNLTTSSLNKAQRRWRFAYAAIYSMRAMLSLVKEIVPARIDPKTSDASLSLSYTALESGEGAKINSMPLSYV-PAIDQEQLVEIMKGKDLPGIQALGGVEGVAASLRTNPTKGIHGNEQEVSRRRDLFGSNTYHKPPPKGLLFFVYEAFKDLTILILLVCAIFSLGFGIKEHGIKEGWYEGGSIFVAVFLVIVVSALSNFRQERQFDKLSKISNNIKVEVLRDSRRQHISIFDVVVGDVVFLKIGDQIPADGL 265          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA13_ARATH (Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.251e-64
Identity = 129/247 (52.23%), Postives = 165/247 (66.80%), Query Frame = 2
Query:   53 TLTKAQKRWRLAYWTIYSFRAMLSVLPKGRLLSAEILTSHDYIALDVEPEPSSSHDEANKLVSNSIDPDMDGIRLAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            TL+K+ K+W+LA   +Y  R +L+              S  Y A+D++      H +            +D   L ++VKNK+   L  LGG  G+ +AL +N   GIN   +++ RR   FG+NTY + P KGL HFV+EAFKD TILILL CA LSLGFGIKEHG +EGWY+GGSIFVAVFLV+ VSA SNFRQ RQFDKLSK+S+NIK++VVR  RR +ISIFD+VVGDIV L IGD++PADG+
Sbjct:   26 TLSKSNKKWQLALIKLYCSRTLLNCAKHAIRKPGLFPRSLSYTAIDLDHHHGDDHFK------------IDTETLNDLVKNKNQEKLESLGGPNGLVSALKSNTRLGINEEGDEIQRRRSTFGSNTYTRQPSKGLFHFVVEAFKDLTILILLGCATLSLGFGIKEHGLKEGWYDGGSIFVAVFLVVAVSAVSNFRQNRQFDKLSKVSSNIKIDVVRNGRRQEISIFDIVVGDIVCLNIGDQVPADGV 260          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA8_ARATH (Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.625e-43
Identity = 85/174 (48.85%), Postives = 124/174 (71.26%), Query Frame = 2
Query:  272 RLAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            +L  M K+ +S  L   GG +G+AN L TNPE GI+G+D+D+ +R  ++G+NTY +   KG L F+ +A  D T++IL+V A  SL  GIK  G +EGWY+GGSI  AV LVIVV+A S+++Q+ QF  L+    NI +EV+R  RR++ISI+D+VVGD++ L IG+++PADG+
Sbjct:  120 QLVIMSKDHNSGALEQYGGTQGLANLLKTNPEKGISGDDDDLLKRKTIYGSNTYPRKKGKGFLRFLWDACHDLTLIILMVAAVASLALGIKTEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFQNLNDEKRNIHLEVLRGGRRVEISIYDIVVGDVIPLNIGNQVPADGV 293          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA9_ARATH (Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=ACA9 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.654e-41
Identity = 84/179 (46.93%), Postives = 123/179 (68.72%), Query Frame = 2
Query:  257 DMDGIRLAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            D+D  +L  M +N++   L   GGV+GVA  L +N E GIN ++++V  R   FG+NTY K   K    F+ EA++D T++IL++ A  SL  GIK  G +EGW +GGSI  AV LVIVV+A S++RQ+ QF  L+    NI++EV+R  R ++ISI+D+VVGD++ L+IGD++PADG+
Sbjct:  129 DIDLEKLVSMTRNQNMSNLQQYGGVKGVAEKLKSNMEQGINEDEKEVIDRKNAFGSNTYPKKKGKNFFMFLWEAWQDLTLIILIIAAVTSLALGIKTEGLKEGWLDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNDEKRNIQLEVMRGGRTVKISIYDVVVGDVIPLRIGDQVPADGV 307          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA10_ARATH (Calcium-transporting ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=ACA10 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.645e-40
Identity = 81/174 (46.55%), Postives = 123/174 (70.69%), Query Frame = 2
Query:  272 RLAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            ++  + ++++   L  LGGV G+++ L TN E GI+G+D+D+ +R   FG+NTY +   +    FV EA +D T++IL+V A  SL  GIK  G E+GWY+G SI  AV LVIVV+A S++RQ+ QF  L++   NI++EV R+ RR++ISI+D+VVGD++ L IGD++PADG+
Sbjct:  120 QIVSISRDQNIGALQELGGVRGLSDLLKTNLEKGIHGDDDDILKRKSAFGSNTYPQKKGRSFWRFVWEASQDLTLIILIVAAVASLALGIKTEGIEKGWYDGISIAFAVLLVIVVTATSDYRQSLQFQNLNEEKRNIRLEVTRDGRRVEISIYDIVVGDVIPLNIGDQVPADGV 293          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA5_ORYSJ (Probable calcium-transporting ATPase 5, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os11g0140400 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.301e-34
Identity = 88/251 (35.06%), Postives = 143/251 (56.97%), Query Frame = 2
Query:   62 KAQKRWRLAYWTIYSFRAM----LSVLPKGRLLSAEILTSHDYIALDVEPEPSS---SHDEANKLVSNSIDPDMDGIRLAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            +AQ+RWR A  TI   R      +  L +  L  A++ ++ + I + +  + ++   S DE                 LA +    DS  L + GGV+G++  + ++ ++GI  +D D   R  ++G N Y + P +    FV +AF+D T++IL+VCA LS+  G+   G  +G Y+G  I +++FLV++V+A S+++Q+ QF +L      I + V R+ RR +ISI+DLVVGDIV L IGD++PADGL
Sbjct:   22 EAQRRWRQAVGTIVKNRRRRFRWVPDLDRRSLDKAKVRSTQEKIRVALYVQQAALIFSDDE-----------------LALITSKHDSKALKMHGGVDGISKKVRSSFDHGICASDLDT--RQNIYGVNRYAEKPSRSFWMFVWDAFQDMTLIILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVSDYKQSLQFKELDNEKKKIFIHVTRDGRRQKISIYDLVVGDIVHLSIGDQVPADGL 253          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA4_ORYSJ (Probable calcium-transporting ATPase 4, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0136900 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.925e-34
Identity = 92/260 (35.38%), Postives = 146/260 (56.15%), Query Frame = 2
Query:   62 KAQKRWRLAYWTIYSFRAM----LSVLPKGRLLSAEILTSHDYI--ALDVEPEPSSSHDEANKL----------VSNSIDPDMDGIRLAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            +AQ+RWR A  TI   R      +  L +  L  A++ ++ + I  AL V+       D A K              +I+PD     LA +    DS  L + GGV+G++  + ++ ++GI  ++ D   R  ++G N Y + P +    FV +A +D T++IL+VCA LS+  G+   G  +G Y+G  I +++FLV++V+A S+++Q+ QF +L      I + V R+ RR +ISI+DLVVGDIV L IGD++PADGL
Sbjct:   22 EAQRRWRQAVGTIVKNRRRRFRWVPDLERRSLDKAKVRSTQEKIRVALYVQQAALIFSDGAKKKEYKLTGDIIKAGYAINPD----ELALITSKHDSKALKMHGGVDGISIKVRSSFDHGIYASELDT--RQNIYGVNRYAEKPSRSFWMFVWDALQDMTLIILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVSDYKQSLQFKELDNEKKKIFIHVTRDGRRQKISIYDLVVGDIVHLSIGDQVPADGL 275          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA11_ARATH (Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.126e-34
Identity = 68/173 (39.31%), Postives = 114/173 (65.90%), Query Frame = 2
Query:  275 LAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            LA MV+N D+ +L+ +GG EG+A  +  +   G+  ++  +  R +++G N Y + P +  L FV EA +D T++IL+VCA +S+G G+   G  +G Y+G  I +++ LV++V+A S+++Q+ QF  L +    I ++V R+  R ++SI DLVVGD+V L IGD++PADG+
Sbjct:  100 LASMVRNHDTKSLTKIGGPEGIAQKVSVSLAEGVRSSELHI--REKIYGENRYTEKPARSFLTFVWEALQDITLIILMVCAVVSIGVGVATEGFPKGMYDGTGILLSIILVVMVTAISDYKQSLQFRDLDREKKKIIIQVTRDGSRQEVSIHDLVVGDVVHLSIGDQVPADGI 270          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA4_ARATH (Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.142e-33
Identity = 77/203 (37.93%), Postives = 119/203 (58.62%), Query Frame = 2
Query:  185 LDVEPEPSSSHDEANKLVSNSIDPDMDGIRLAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            +D    P     +  K    SI+ D     LA MV+  D+ +L+  GGVE +A  +  +   GI  ++  +  R ++FG N Y + P +  L FV EA  D T++IL+VCA +S+G G+   G   G Y+G  I +++ LV++V+A S+++Q+ QF  L +    I V+V R+  R +ISI DLVVGD+V L IGD++PADG+
Sbjct:   74 IDAAARPEYKLTDEVKKAGFSIEAD----ELASMVRKNDTKSLAQKGGVEELAKKVSVSLSEGIRSSEVPI--REKIFGENRYTEKPARSFLMFVWEALHDITLIILMVCAVVSIGVGVATEGFPRGMYDGTGILLSILLVVMVTAISDYKQSLQFRDLDREKKKIIVQVTRDGSRQEISIHDLVVGDVVHLSIGDQVPADGI 270          
BLAST of FC873860 vs. ExPASy Swiss-Prot
Match: ACA1_ORYSJ (Calcium-transporting ATPase 1, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0586600 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.381e-31
Identity = 71/173 (41.04%), Postives = 108/173 (62.43%), Query Frame = 2
Query:  275 LAEMVKNKDSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDKIPADGL 793
            L  +V+  DS  L   GGV G+A+ L T+P  G++  +E + RR  ++G N + +   +    FV EA +DTT++IL VCA +SL  GI   G  +G ++G  I  ++ LV+ V+A S++RQ+ QF  L K    I+V+V R   R ++SI+DL+ GD+V L IGD++PADGL
Sbjct:  103 LGSIVEGHDSKKLITHGGVTGIADKLATSPADGLSTAEESIKRRQDVYGLNKFTESEVRSFWVFVWEALQDTTLIILAVCAFVSLVVGIAMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKIQVQVTRNGFRQRLSIYDLLPGDVVHLAIGDQVPADGL 275          
The following BLAST results are available for this feature:
BLAST of FC873860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ACA12_ARATH3.740e-8563.12Putative calcium-transporting ATPase 12, plasma me... [more]
ACA13_ARATH1.251e-6452.23Putative calcium-transporting ATPase 13, plasma me... [more]
ACA8_ARATH4.625e-4348.85Calcium-transporting ATPase 8, plasma membrane-typ... [more]
ACA9_ARATH5.654e-4146.93Calcium-transporting ATPase 9, plasma membrane-typ... [more]
ACA10_ARATH1.645e-4046.55Calcium-transporting ATPase 10, plasma membrane-ty... [more]
ACA5_ORYSJ2.301e-3435.06Probable calcium-transporting ATPase 5, plasma mem... [more]
ACA4_ORYSJ3.925e-3435.38Probable calcium-transporting ATPase 4, plasma mem... [more]
ACA11_ARATH5.126e-3439.31Putative calcium-transporting ATPase 11, plasma me... [more]
ACA4_ARATH1.142e-3337.93Calcium-transporting ATPase 4, plasma membrane-typ... [more]
ACA1_ORYSJ2.381e-3141.04Calcium-transporting ATPase 1, plasma membrane-typ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AH09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873860 ID=FC873860; Name=FC873860; organism=Citrus clementina; type=EST; length=793bp
TAAAATCCCACGTTATAATTGCAGCACATTGCTCATTAACGTCACCACCA
GCACCCTCACAAAAGCTCAGAAGCGATGGCGCCTTGCCTACTGGACAATC
TATTCTTTCCGTGCTATGCTTTCTGTTCTACCCAAAGGCCGGCTTCTCTC
AGCCGAAATCCTGACAAGTCATGATTACATTGCCCTTGATGTTGAGCCTG
AGCCTAGCAGCTCTCATGATGAGGCAAATAAACTTGTTTCCAACTCCATT
GATCCTGATATGGATGGAATAAGACTCGCCGAAATGGTGAAGAACAAAGA
CTCGCATACCCTCAGCCTTCTTGGAGGAGTTGAAGGCGTGGCCAACGCTC
TTGGGACAAATCCTGAATACGGAATCAATGGCAATGATGAAGATGTCAGT
AGGAGGTCTCAACTCTTTGGTGCTAACACTTATCATAAGCCACCTCCTAA
AGGGCTTTTACATTTCGTGCTGGAAGCTTTCAAAGACACCACCATTCTAA
TCCTTCTCGTATGCGCTGCCCTGTCTCTTGGTTTTGGCATCAAAGAACAT
GGGGCAGAAGAAGGTTGGTATGAAGGCGGAAGTATCTTTGTAGCCGTCTT
TCTGGTTATTGTTGTCTCTGCTTTTAGTAACTTCAGACAGGCAAGACAGT
TTGACAAGCTATCAAAAATAAGTAACAACATCAAAGTTGAAGTTGTTAGA
GAAGCCCGGCGCTTGCAGATATCCATATTTGACCTTGTAGTTGGAGATAT
TGTCTTCCTCAAAATTGGAGACAAAATTCCGGCTGATGGGTTG
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