FC873866

Overview
NameFC873866
Unique NameFC873866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10193 contig Ccv1_Contig10193:65..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: CA123_HUMAN (UPF0587 protein C1orf123 OS=Homo sapiens GN=C1orf123 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.075e-24
Identity = 59/158 (37.34%), Postives = 95/158 (60.13%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESL-AGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKF 470
            L + A LEN+TNL+P G     +F ++ K+KCG CGE+S K   + L +++  +GG+G+ +++QKCK C RE ++ ++    KP   E   +  F  ++ F+CRG EPVDF    G+  E + +GT + DI+L   D+ +YDEK +  V I  +  +F
Sbjct:    6 LQLKATLENITNLRPVG----EDFRWYLKMKCGNCGEISDKWQYIRLMDSVALKGGRGSASMVQKCKLCARENSIEILSSTIKPYNAE--DNENFKTIVEFECRGLEPVDFQPQAGFAAEGVESGTAFSDINLQEKDWTDYDEKAQESVGIYEVTHQF 157          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: CA123_XENLA (UPF0587 protein C1orf123 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 58/158 (36.71%), Postives = 94/158 (59.49%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESL-AGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKF 470
            L   A LENLT L+P G     +F +F KLKCG CGE+S K   ++L +++P +GG+G+ +++Q+CK C RE ++ ++     P   E +++  F  ++ F+CRG EP+DF    G+  E    GT + +I+L   D+ +YDEK +  V I  +  +F
Sbjct:    6 LQFKASLENLTQLRPHG----EDFRWFLKLKCGNCGEVSDKWQYITLMDSVPLKGGRGSASMVQRCKLCSRENSIDILAASLHPYNAEDSET--FKTIVEFECRGLEPIDFQPQAGFAAEGAETGTPFHEINLQEKDWTDYDEKAKESVGIYEVEHRF 157          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: CA123_BOVIN (UPF0587 protein C1orf123 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 58/158 (36.71%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESL-AGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKF 470
            L + A LEN+TNL+P G     +F ++ K+KCG CGE+S+K   + L +++  +GG+G+ +++QKCK C RE ++ ++    K  +  A  +  F  ++ F+CRG EPVDF    G+  E + +GT + DI+L   D+ +YDEK +  V I  +  +F
Sbjct:    6 LQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKGGRGSASMVQKCKLCSRENSIEILSSTIK--SYNAEDNEKFKTIVEFECRGLEPVDFQPQAGFAAEGVESGTVFSDINLQEKDWTDYDEKAQESVGIYEVTHQF 157          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: CA123_RAT (UPF0587 protein C1orf123 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 58/158 (36.71%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESL-AGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKF 470
            L + A LEN+TNL+P G     +F ++ K+KCG CGE+S+K   + L +++  +GG+G+ +++QKCK C RE ++ ++    K  +  A  +  F  ++ F+CRG EPVDF    G+  E + +GT + DI+L   D+ +YDEK +  V I  +  +F
Sbjct:    6 LQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKGGRGSASMVQKCKLCARENSIEILSSTIK--SYNAEDNEKFKTIVEFECRGLEPVDFQPQAGFAAEGVESGTVFSDINLQEKDWTDYDEKTQESVGIFEVTHQF 157          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: CA123_MOUSE (UPF0587 protein C1orf123 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 57/158 (36.08%), Postives = 95/158 (60.13%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESL-AGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKF 470
            L + A LEN+TNL+P G     +F ++ K+KCG CGE+S+K   + L +++  +GG+G+ +++QKCK C RE ++ ++    K    E  +   F  ++ F+CRG EPVDF    G+  + + +GT + DI+L   D+ +YDEK +  V I  +  +F
Sbjct:    6 LQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKGGRGSASMVQKCKLCARENSIDILSSTIKAYNAEDNEK--FKTIVEFECRGLEPVDFQPQAGFAADGVESGTVFSDINLQEKDWTDYDEKAQESVGIFEVTHQF 157          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: U587_DROME (UPF0587 protein CG4646 OS=Drosophila melanogaster GN=CG4646 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 63/163 (38.65%), Postives = 88/163 (53.99%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTT-NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESLA-GTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKFEVVK 482
            L ISA LEN+  L+       P++S+F KLKC  CGE S K   ++ +E +          N   KCK C RE ++ ++     P T  A  SG F  +++F+CRG EPV+F   VGW+V S   G Q+E++DLS  D+ EYD+K    V I     KF  +K
Sbjct:    6 LQISATLENVDKLETS----HPDYSFFLKLKCSNCGEQSDKWHDITESERVQQDSRNAAGFNFFMKCKMCSRENSIDIVDKSNAPYT--ADDSGAFKTIVVFECRGAEPVEFSPRVGWRVSSAENGQQFEEVDLSEDDWVEYDQKNNNSVGIYEFASKFIKLK 162          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: U587_NEMVE (UPF0587 protein v1g245604 OS=Nematostella vectensis GN=v1g245604 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 54/157 (34.39%), Postives = 90/157 (57.32%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESLAGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKF 470
            L + A+LEN+TNL+ +G     +F ++  LKC  CGE++++   + L E+ P +GG+G  + + KCK C RE +V ++     P    A+ +G F  ++ FDCRG EP DF    GW  E    +   ++DL+  D+++YDEK +  V +  +  +F
Sbjct:    6 LQLKANLENVTNLKAEG----EDFRWYLMLKCMNCGEVTKQWVYMCLMESQPVKGGRGYAHFVSKCKLCHRENSVDIMKDSIHPYL--ASHNGKFHTIVSFDCRGVEPTDFSPRTGWTAEGENTSTPFEVDLTEKDWSDYDEKAQNAVGVYGVTSQF 156          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: U587_DROPS (UPF0587 protein GA18326 OS=Drosophila pseudoobscura pseudoobscura GN=GA18326 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 63/164 (38.41%), Postives = 86/164 (52.44%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTT--NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKV-ESLAGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKFEVVK 482
            L ISA LEN+  L+       P++ +F KL C  CGE S K   ++ +E +  Q  + T   N   KCK C RE ++ ++     P T  A  SG    +++FDCRG EPVDF    GWKV  S  G  +ED+DLS  D+ EYD+K    V +     KF  +K
Sbjct:    6 LQISATLENIDKLETS----HPDYPFFVKLTCSNCGEQSDKWHDITESERVQ-QDTRNTAGFNFFMKCKMCSRENSIDIVEKSNVPYT--ADDSGKLKTIVIFDCRGLEPVDFSPRSGWKVFSSENGQSFEDVDLSEDDWVEYDQKNNNSVGVYEFVSKFIKLK 162          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: U587_CAEEL (UPF0587 protein F46B6.12 OS=Caenorhabditis elegans GN=F46B6.12 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 55/162 (33.95%), Postives = 85/162 (52.47%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESL-AGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKFEVVK 482
            L +   L+ +T+L+P    D  +F +  KLKC  CGE       V L E L   G +G  NL++KCK CGR  T+T++    K    E  Q+  +  + +FDCRG EP DF     W  +S+  G  + +IDLS  ++ ++D+K    V IS +  +F  ++
Sbjct:    6 LELKCQLKGITDLRPD---DTDSFHWHMKLKCTNCGEAPDHWQYVVLNEMLDVPGSRGEANLVEKCKLCGRVNTLTIVEDMFKSYNIE--QNEKWQQIAVFDCRGLEPFDFDPRDEWIAKSVETGNAFHEIDLSEKEWVDFDDKAMEAVEISEMSSQFTTIR 162          
BLAST of FC873866 vs. ExPASy Swiss-Prot
Match: U587_DICDI (UPF0587 protein OS=Dictyostelium discoideum GN=DDB_G0270194 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3
Query:    3 LMISADLENLTNLQPQGGCDDPNFSYFF-KLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESLAGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFKFEVVK 482
            + + A+LE + N+ P        +  FF K+KC  CGE+  K   + L ++     GK   NL  KCK C RE ++ +        +    +S     +  FDCRG E  +F     W V S +G +Y+D+DL  G+++E++E+    + I ++    + +K
Sbjct:    6 ISLKAELEEIQNIFPA------TYKIFFLKIKCSNCGEIPDK--WIGLDKSNIEVIGKSNVNLATKCKGCNRENSIVI---EDTDYSSRTIESEKDFEIARFDCRGVEIEEFDPRDNWIVVSSSGKEYKDVDLEEGEWSEFEERTSTSLTILSIESSIKKIK 156          
The following BLAST results are available for this feature:
BLAST of FC873866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CA123_HUMAN1.075e-2437.34UPF0587 protein C1orf123 OS=Homo sapiens GN=C1orf1... [more]
CA123_XENLA1.833e-2436.71UPF0587 protein C1orf123 homolog OS=Xenopus laevis... [more]
CA123_BOVIN1.188e-2336.71UPF0587 protein C1orf123 homolog OS=Bos taurus PE=... [more]
CA123_RAT2.027e-2336.71UPF0587 protein C1orf123 homolog OS=Rattus norvegi... [more]
CA123_MOUSE2.647e-2336.08UPF0587 protein C1orf123 homolog OS=Mus musculus P... [more]
U587_DROME3.822e-2238.65UPF0587 protein CG4646 OS=Drosophila melanogaster ... [more]
U587_NEMVE3.236e-2134.39UPF0587 protein v1g245604 OS=Nematostella vectensi... [more]
U587_DROPS6.102e-2038.41UPF0587 protein GA18326 OS=Drosophila pseudoobscur... [more]
U587_CAEEL1.963e-1833.95UPF0587 protein F46B6.12 OS=Caenorhabditis elegans... [more]
U587_DICDI1.043e-1128.40UPF0587 protein OS=Dictyostelium discoideum GN=DDB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DF05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873866 ID=FC873866; Name=FC873866; organism=Citrus clementina; type=EST; length=724bp
TGCTGATGATCAGCGCCGATCTCGAGAACCTCACCAATCTCCAACCTCAA
GGCGGCTGCGACGATCCTAACTTCTCTTACTTCTTCAAGTTGAAGTGTGG
ATGCGGAGAACTAAGCCAGAAAGAAACTTGTGTGAGCTTGGCTGAAACTC
TTCCTACTCAAGGAGGCAAGGGAACCACAAATCTCATTCAAAAATGCAAA
TTTTGTGGGAGAGAAGGAACTGTTACTATGATCCCAGGCCGGGGTAAACC
ACTGACCCAGGAAGCTGCTCAATCTGGGGGTTTTAGCCCCTTGATGTTAT
TCGACTGCAGGGGTTATGAGCCTGTGGATTTCGTCTTTGGTGTTGGATGG
AAAGTTGAATCTCTTGCTGGGACTCAGTATGAAGACATTGACTTGTCAGG
AGGGGACTATGCCGAGTACGATGAGAAAGGAGAGTGCCCGGTTATGATTT
CCAACCTCCGCTTCAAGTTTGAAGTGGTGAAGCACTGAAGTAAAGCTCTT
CTCTTGGTACATACGCCCTAACTGTTCCTTGTGAATGAGGTAGAAACATT
TGACTGGATTACATGTAGTATGCAATGTATGGGAGTTGCTTGACGAAATA
TGTCTACTTCTGATTACGTGCATAAAGTGCTGTCATAACAGCAGTCAACT
GATTAATGGCTCGCTAAATGATGTGTTTTTTAGGAAAGTTTGTCTTCTGG
ATACAAAAAAAAAAAAAAAAAAAA
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