FC873870

Overview
NameFC873870
Unique NameFC873870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig662 contig Ccv1_Contig662:390..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.363e-52
Identity = 128/229 (55.90%), Postives = 143/229 (62.45%), Query Frame = 1
Query:   91 GSYNFAEIWQFPVPXXXXXXXXXXXXXQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHG-----NGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFSPKD 762
            G +N AEIWQFP+                   FG        N      DP  + H ++       +G  KRR+ E +SAK VST   +       + + KR K     D+    KAEAE    +  EQ  Q  EP K DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMNPGIEVF PK+
Sbjct:   11 GPFNLAEIWQFPLNGVSTAGDSSRRSFVGPNQFGDADLTTAAN-----GDPARMSHALSQAVIEGISGAWKRREDESKSAKIVSTIGAS-------EGENKRQKI----DEVCDGKAEAESLGTE-TEQKKQQMEPTK-DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKE 221          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.462e-46
Identity = 121/238 (50.84%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   94 SYNFAEIWQFPVPXXXXXXXXXXXXXQKGAHFGQHLSQFGTNREVSGDDPVNLEHK-----MAHGNGVRKRRDV--EDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHS--KAEAEPSS----VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT--RMNPGIEVFSPKD 762
            SY  +EIW FPV              + G     +  +  T  E SG+  V+   +     +  G G RK RD+  ED+S+K VS+SS   +GN + +S  K+ K  GS   N     + E E SS     K  EQ ++P EPPK DYIHVRARRGQATD HSLAERARREKISE+M  LQD++PGCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VN+     P I VF   D
Sbjct:   18 SYTLSEIWPFPV----------NDAVRSGLRLAVNSGRVFTRSEHSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSS---SGNELKESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKP-EPPK-DYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGD 240          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.548e-40
Identity = 93/173 (53.76%), Postives = 118/173 (68.21%), Query Frame = 1
Query:  271 GNGVRKRRDVEDESAKH--VSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAE------QNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN-TRMNPGIEVFSPKD 762
            G   RKR+ V    +K   +ST+S + + ++  + +G +  +  S +     + E E    +  E       N++PPEPPK DYIHVRARRGQATDSHSLAER RREKI ERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VN TR++  ++    KD
Sbjct:  216 GEFSRKRKSVPKGKSKENPISTASPSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDEEEEGEGEGNKSNNTKPPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKD 387          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.257e-39
Identity = 91/182 (50.00%), Postives = 115/182 (63.19%), Query Frame = 1
Query:  226 VSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSG-SRDDNHHSKAEAEPSSVKPAEQNSQPPEP--PKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFSPKD 762
            ++ + P+    KM   +       V    A HV     +G  +R   +  K+   S  S       K +++P   K +E+N    +   P +DYIHVRARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VNTR++  ++    KD
Sbjct:  166 INNEPPITTNEKMPRVSS----SPVFKPLASHVPAGESSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKD 343          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.578e-39
Identity = 100/201 (49.75%), Postives = 121/201 (60.20%), Query Frame = 1
Query:  178 GAHFGQHLSQFGTNREVSGDDPVNLEHK---MAHGNGVRKR-RDVEDESAKHVSTSSGNGN----GNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQ---------NSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRM 729
            G  F  +  QFG++RE  G  P   E     +   + V  R    +  S K  S  SGNG      + +  S+ K    +G       SK +   SS    E+         +++PPE PK DYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCN++ GKA++LDEIINY+QSLQRQVEFLSMKL  VN RM
Sbjct:   67 GIRFPPYPGQFGSDREF-GSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPK-DYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM 265          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.911e-38
Identity = 92/186 (49.46%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  226 VSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPA-------EQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFSPKD 762
            V G   V+ + + + GNG + R     E++ +      NG  N       +  ++    D+N   K   E S   P        +Q  Q  +PPK  YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV GKA++LDEIINY+QSLQRQVEFLSMKL  VN +M+  +E    KD
Sbjct:  208 VPGSGNVSEDTQSSGGNGQKGR-----ETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKD 388          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = 1
Query:  403 DDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFSPKD 762
            +D    K + + S     +++SQ  E PK++YIH+RARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA++LDEIINY+QSLQ+QVEFLSMKL  VN  +N  I+    KD
Sbjct:  172 NDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKD 291          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.282e-34
Identity = 84/169 (49.70%), Postives = 105/169 (62.13%), Query Frame = 1
Query:  298 VEDESAKHVSTSSGNGNGNRVNDSD-------------GKRIKTSGSRDDNHHSKAEAEPSS-VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFSPKD 762
            V++ S  +VS  S +  GN  +D+               KRI      +++   K E  P+S         QP +  K  YIH+RARRGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q+EFLSMKL AVN  ++  +E    KD
Sbjct:  140 VKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKD 308          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33
Identity = 89/198 (44.95%), Postives = 115/198 (58.08%), Query Frame = 1
Query:  178 GAHFGQHLSQFGTN-------REVSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVN-DSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNS-------QPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 726
            G     +LS  G N         V GD  +++  +   G G  K+R  + E+ K  +        NR +   +G+  K+  +  +N  +K+  +       E+N+          E  K DYIHVRARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+ GKA +LDEIINY+QSLQRQ+EFLSMKL  VN R
Sbjct:   49 GGEMDSYLSTAGLNLPMMYGETTVEGDSRLSISPETTLGTGNFKKRKFDTET-KDCNEKKKKMTMNRDDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR 245          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH064_ARATH (Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 77/133 (57.89%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  376 KRIKTSGSRDDNHHSKAE---AEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFSPKDF 765
            K+IK     + +   K+     E SS    E +    E  K DYIHVRARRGQATD HSLAERARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQVEFLSMKL  +N  +   +E  S K F
Sbjct:  139 KKIKVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVEDVSVKQF 271          
The following BLAST results are available for this feature:
BLAST of FC873870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
BPE_ARATH1.363e-5255.90Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH079_ARATH9.462e-4650.84Transcription factor bHLH79 OS=Arabidopsis thalian... [more]
BH078_ARATH4.548e-4053.76Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH062_ARATH2.257e-3950.00Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH077_ARATH8.578e-3949.75Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH049_ARATH1.911e-3849.46Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH074_ARATH9.814e-3560.83Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH076_ARATH1.282e-3449.70Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH063_ARATH4.123e-3344.95Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH064_ARATH5.385e-3357.89Transcription factor bHLH64 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873870 ID=FC873870; Name=FC873870; organism=Citrus clementina; type=EST; length=766bp
TTCTTGAATCTTCTCAAATAAATGCCAGGACCTGGTTTGATGAGCGCTTG
AGTTCGAGTGTTGTCTGTGAGATTATTGTAGATGGATCAGGGTTCCTATA
ATTTTGCAGAGATCTGGCAGTTTCCGGTTCCCGGGAGTGGCAGTATGAGT
GAATCTGGCGGTGGGTTGGGGCAGAAAGGAGCTCACTTTGGGCAGCATTT
GAGTCAATTTGGGACTAATCGAGAGGTTTCTGGTGATGATCCAGTGAACT
TGGAGCATAAAATGGCCCATGGGAATGGAGTAAGGAAGCGGCGTGATGTG
GAGGATGAGTCAGCCAAGCATGTATCTACAAGCAGTGGCAACGGCAACGG
CAATCGAGTGAATGATTCTGATGGAAAACGGATTAAAACATCTGGAAGTA
GAGATGACAATCACCATTCCAAAGCTGAAGCAGAGCCCAGTTCGGTCAAG
CCTGCTGAACAAAATAGTCAACCACCGGAGCCTCCTAAACAGGATTACAT
CCATGTACGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTTTAGCAG
AAAGAGCTAGGAGAGAAAAGATAAGCGAAAGGATGAAAATTCTCCAGGAC
TTGGTTCCTGGTTGTAACAAGGTCATCGGCAAAGCATTGGTCCTGGATGA
GATAATTAACTACATCCAATCGCTACAGCGGCAGGTTGAGTTTCTGTCAA
TGAAGCTTGAAGCAGTCAATACAAGAATGAACCCTGGCATTGAGGTATTT
TCTCCTAAGGATTTTA
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