FC875283

Overview
NameFC875283
Unique NameFC875283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:53..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.040e-98
Identity = 175/227 (77.09%), Postives = 198/227 (87.22%), Query Frame = 1
Query:    1 GKGGMSQGE---KEDGEEVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            GKGG S+     KE GEE NMAAWL+G+ TLKIQP  LPSLGPYDV VR+KAVG+CGSDVH  KT+R A+F+VK+PMVIGHECAG+IE+VGSEVK LV GDRVALEPGISC +C  C+ G+YNLC E K  GSPP +G LANQVVHP++LCFKLPDNVSLEEGAMCEPLSVG+HACRRAN+GPETNVLIMGSGPIGLVTML ARAFGAPRIV+VDVDD RL++AK+L
Sbjct:    2 GKGGNSEDAVSGKEHGEE-NMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDL 227          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 213.772 bits (543), Expect = 7.054e-55
Identity = 102/208 (49.04%), Postives = 145/208 (69.71%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            N++  + G   ++++   +P LGP DVL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H AD C+KLPD+V+ EEGA+ EPLSVG++ACRR ++     VL+ G+GPIG+VT+L A+A GA ++V++D+   RL+ AK +
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGVPREIDEFCKIGRYNLTPSIFFCATPPDDGNLCRFYKHSADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPIGIVTLLVAKAMGASQVVVIDLSASRLAKAKEV 216          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 9.213e-55
Identity = 102/208 (49.04%), Postives = 144/208 (69.23%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            N++  + G   ++++   +P LGP DVL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     +YCK GRYNL P      +PP  G L     H AD C+KLPD+V+ EEGA+ EPLSVG++ACRR ++     VL+ G+GP+G+VT+L A+A GA ++V+ D+   RL+ AK +
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNLTPTIFFCATPPDDGNLCRFYKHNADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPVGMVTLLVAKAMGAAQVVVTDLSASRLTKAKEV 216          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.052e-54
Identity = 104/208 (50.00%), Postives = 142/208 (68.27%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGAM EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA ++V+ D+   RLS AK +
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 216          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.052e-54
Identity = 103/208 (49.52%), Postives = 142/208 (68.27%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA ++V+ D+   RLS AK +
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 216          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.680e-54
Identity = 102/208 (49.04%), Postives = 143/208 (68.75%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+V++L A+A GA ++V+ D+   RLS AK +
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHRVLVCGAGPIGVVSLLVAKAMGAAQVVVTDLSAPRLSKAKEI 216          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 5.971e-54
Identity = 103/208 (49.52%), Postives = 143/208 (68.75%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            N++  + G   L+++   +P  GP +VL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A+ C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GPIGLV++L A+A GA ++V+ D+   RLS AK +
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVSLLAAKAMGAAQVVVTDLSASRLSKAKEV 215          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.126e-52
Identity = 102/208 (49.04%), Postives = 142/208 (68.27%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            N++  + G   L+++   +P  GP +VL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA++PG      ++CK GRYNL P      +PP  G L     H A+ C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GPIGLV +L A+A GA ++V+ D+   RLS AK +
Sbjct:    7 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQG-RIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEV 213          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 4.731e-51
Identity = 90/206 (43.69%), Postives = 135/206 (65.53%), Query Frame = 1
Query:   55 AAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            AA +     +KI+ L +P +   +VL+++ AVG+CGSD+H+    R+ ++VV++P ++GHECAG I  VGS V     GDRVA+EPG++C +C+ CK GRYNLCP+ + L +PPV G     +    D  F +PD++S EE A+ EP SVG+HA  R  + P + + IMG GP+GL+ +  A+AFGA  I++ D++  RL  AK +
Sbjct:   11 AAVMHNTREIKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSVGIHAAARTKLQPGSTIAIMGMGPVGLMAVAAAKAFGAGTIIVTDLEPLRLEAAKKM 216          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: DHSO_SCHPO (Putative sorbitol dehydrogenase OS=Schizosaccharomyces pombe GN=tms1 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.206e-46
Identity = 89/185 (48.11%), Postives = 120/185 (64.86%), Query Frame = 1
Query:  121 YDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNLV 675
            + V V +KA G+CGSDVH+ K   + DF++K+PM++GHE AGV+ +VG  V +L PGD VA+EPG  C  CDYC+ GRYNLCP  +   +PP  G L    +   D C KLP  +S+EEGA+ EP+SV VHA  R N+   + VL+MG G +GL+ M  A+A+GA  IV VD    R+  A+  V
Sbjct:   30 HQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYYITTEDFCTKLPKQISVEEGALFEPMSVAVHAMTRGNLKCGSRVLVMGCGTVGLLMMAVAKAYGAIDIVAVDASPSRVEFAQKYV 214          
The following BLAST results are available for this feature:
BLAST of FC875283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
IDND_VITVI1.040e-9877.09L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_RAT7.054e-5549.04Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_MOUSE9.213e-5549.04Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_PONAB2.052e-5450.00Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_HUMAN2.052e-5449.52Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_MACFA2.680e-5449.04Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_BOVIN5.971e-5449.52Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP1.126e-5249.04Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_BACSU4.731e-5143.69Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
DHSO_SCHPO1.206e-4648.11Putative sorbitol dehydrogenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC31402C03EF CTVClemen1 Citrus clementina cDNA clone C31402C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875283 ID=FC875283; Name=FC875283; organism=Citrus clementina; type=EST; length=689bp
GGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAA
CATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGG
AGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTT
GGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGA
TTTTGTAGTGAAAGAGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCA
TAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTG
GCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGG
TCGATACAATTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTC
ATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAG
CTGCCCGACAATGTCAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAG
TGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATG
TGCTTATCATGGGATCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCT
CGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCG
TTTATCTGTTGCAAAGAACTTGGTGCAGATAATATTGTT
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