FC875291

Overview
NameFC875291
Unique NameFC875291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9449 contig Ccv1_Contig9449:10..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875291 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.473e-39
Identity = 103/204 (50.49%), Postives = 122/204 (59.80%), Query Frame = 1
Query:   79 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPRQSLRSALGLRKEVP 684
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALGDRG+FVDEP   TGL  AVIPP + +RSALGL+ + P
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGKDVRSALGLKTKGP 194          

HSP 2 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  382 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 606
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP            AI      GKF+ + +E
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272          
BLAST of FC875291 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 99/204 (48.53%), Postives = 109/204 (53.43%), Query Frame = 1
Query:   79 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPRQSLRSALGLRKEVP 684
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIPP +S +SALGL +  P
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGP 197          

HSP 2 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  382 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 606
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of FC875291 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 95/202 (47.03%), Postives = 107/202 (52.97%), Query Frame = 1
Query:   79 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPRQSLRSALGLRKEVP 684
            MAQTMLL +           ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL DRGKF+D+P  PTGL  AVIPP +  +SALGL +  P
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGP 195          

HSP 2 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  382 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 606
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKFV + +E
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273          
BLAST of FC875291 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 96/204 (47.06%), Postives = 108/204 (52.94%), Query Frame = 1
Query:   79 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPRQSLRSALGLRKEVP 684
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+F+D+P   TGL  AVIPP +S +SALGL +  P
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGP 197          

HSP 2 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  382 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 606
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of FC875291 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.059e-34
Identity = 79/119 (66.39%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  328 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPRQSLRSALGLRKEVP 684
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIPP +++RSALGL+++ P
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGP 185          

HSP 2 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  382 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 606
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP            AI      GKF+ +  E
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263          
The following BLAST results are available for this feature:
BLAST of FC875291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL5.473e-3950.49Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_SOLLC5.664e-3648.53Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_TOBAC1.262e-3547.03Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLSG1.822e-3447.06Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH4.059e-3466.39Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC31402C11EF CTVClemen1 Citrus clementina cDNA clone C31402C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875291 ID=FC875291; Name=FC875291; organism=Citrus clementina; type=EST; length=692bp
GAGTGAATCTGAAACAGTGAAACTAGCTTTGCTGGCTTGAGAAATCTAGC
AGAGTGACAACATATTCATTCAATATTAATGGCTCAAACTATGCTGCTCA
TGTCTGGGGTTTCCACTAGCCACGCAGGAAACTTGAAAAGAGACTCTTTA
GTCACATTTCAAACGCAGATGCTGAGACCTAAGCCATTCTCTCATCTTAT
GTTCAACCCACTCTCTAATGAATCTTTAACTGCTGCTGCGGCTTCTTCAT
CATCTAAAGCTTTTTCTACTGTTGCCCTCTTCAAATCTAAAACCAAAGCT
CCACCCAAGACCAAGAAGGTTGAATCAAAGCCAAAAGTTGAGGATGGTAT
CTTTGGGACCTCTGGAGGATTTGGTTTTACAAAGCAAAATGAGCTCTTTG
TTGGTCGTGTTGCCATGATTGGCTTTGCTGCTTCCTTGTTGGGTGAGGGA
ATAACTGGGAAGGGGATTCTAGCTCAGTTGAATTTAGAGACCGGAATTCC
AATCTATGAAGCAGAGCCACTGCTTTTATTTTTCATCCTGTTCACCTTGC
TTGGAGCAATTGGAGCTTTGGGTGACCGTGGTAAGTTCGTTGATGAGCCA
GATGAGCCCACTGGGCTCGGAGGAGCTGTCATTCCTCCNAGGCAAAGCTT
AAGATCAGCATTGGGTCTCAGGAAGGAGGTCCCATATTTGGA
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