FC875292

Overview
NameFC875292
Unique NameFC875292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875292_ssr372 microsatellite FC875292_ssr372:372..383. BLAST: Citrus ESTs to Populus V2 proteins
Homology
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BLAST of FC875292 vs. ExPASy Swiss-Prot
Match: BLH1_ARATH (BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 54/147 (36.73%), Postives = 66/147 (44.90%), Query Frame = 3 
Query:  282 MATYFHGNPAEFQAPD--GLQTLVLMNPTTYVXXXXXXXXXFSDTNXXXXXXXXHN--------SLIFLNXXXXXXXXXXXXXXTQHFVGIPTTAHQ------DDSISPLHGLLPRV----HXXXXXXXXXXXXARDTPRAKQGLSL 662
            MA YFHGNP E  A    GLQTL+LMNPTTYV          ++ N         N        S +FL+              +Q FVGIP + H+       D+IS LHG  PRV    +            A +TPRA+QGLSL
Sbjct:    1 MAAYFHGNPPEISAGSDGGLQTLILMNPTTYVQYTQQDNDSNNNNNSNNSNNNNTNTNTNNNNSSFVFLD------SHAPQPNASQQFVGIPLSGHEAASITAADNISVLHGYPPRVQYSLYGSHQVDPTHQQAACETPRAQQGLSL 141
The following BLAST results are available for this feature:
BLAST of FC875292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BLH1_ARATH2.167e-1136.73BEL1-like homeodomain protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC31402C12EF CTVClemen1 Citrus clementina cDNA clone C31402C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875292 ID=FC875292; Name=FC875292; organism=Citrus clementina; type=EST; length=692bp
GATATAATATATTTTTTCCTTTTCAGTGGGGAAGTTGCAGAGATTTGAAG
TCTGACAAAGTGCTTTCACCTATTAGTGAAGATTCATATATAGGCAGCAG
CAGTGTAGATTGATCATGAAGCTGCACGTGCACACTCAATTTTCCTTCAC
ACCAGGTTTTGCTTGATAAGATCGATCCATCGATGGGCTGATTGCTCAAA
TTAAGACTCAAATCAGGCAATTATAAGTTCGTTTCGGTTTCGTTTTTCAA
GAACACAAGATCAAAATAATAAGGTAACAGGATGGCAACGTACTTTCATG
GGAACCCAGCTGAGTTTCAAGCCCCAGATGGGCTTCAAACCCTCGTACTT
ATGAACCCTACAACTTACGTTCAACAACAACAACAGCAACAGCAACAATT
CTCCGACACAAATCCTCCTCCGGCGCCGGCGCCGGCTCACAACAGCCTCA
TTTTCCTCAACTCCTCTGCCATCTCCCCTCACGCGCCGCCGCCACCTTCC
CACACTCAACACTTCGTCGGCATCCCCACCACCGCTCATCAGGATGACTC
CATCTCCCCTCTGCATGGACTCCTGCCGCGCGTCCACTACAACCTGTACA
ACCCCAATTACCCTAGTCCACCCGCGCGTGACACCCCACGCGCCAAGCAG
GGACTGTCTTTGAAGCCTCTCTTCCACCACACCCCGCCTTCG
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