FC875300

Overview
NameFC875300
Unique NameFC875300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3530 contig Ccv1_Contig3530:353..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875300 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.839e-45
Identity = 102/195 (52.31%), Postives = 133/195 (68.21%), Query Frame = 2
Query:   98 MASNGANQPLL-SGFVDSTPQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETXQVRY 658
            M+S+ A  PLL +  +D+  Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE+ T ++RY
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNKLRY 195          
BLAST of FC875300 vs. ExPASy Swiss-Prot
Match: KCO6_ARATH (Probable calcium-activated outward-rectifying potassium channel 6 OS=Arabidopsis thaliana GN=KCO6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  191 LRRCRSAPQTDVAA---LDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHR 598
            L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++         +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS    Y++D QE  ++ +  R
Sbjct:  118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKR 249          
BLAST of FC875300 vs. ExPASy Swiss-Prot
Match: KCO5_ARATH (Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic OS=Arabidopsis thaliana GN=KCO5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 52/180 (28.89%), Postives = 89/180 (49.44%), Query Frame = 2
Query:  143 DSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKAL--------HRYQKVGPTDILKEIETXQVR 655
            DS     N+   + R L R R+AP   V   D+  K       S   K     ++ +  L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  FV  G G + + LS   +Y++D QE +++  +        H + +    D + + E  ++R
Sbjct:   68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMR 243          
BLAST of FC875300 vs. ExPASy Swiss-Prot
Match: KCO2_ARATH (Probable calcium-activated outward-rectifying potassium channel 2 OS=Arabidopsis thaliana GN=KCO2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  305 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 571
            + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  FV  G G + + LS    Y++D QE
Sbjct:  148 QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQE 236          
The following BLAST results are available for this feature:
BLAST of FC875300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
KCO1_ARATH1.839e-4552.31Calcium-activated outward-rectifying potassium cha... [more]
KCO6_ARATH6.815e-1635.25Probable calcium-activated outward-rectifying pota... [more]
KCO5_ARATH1.285e-1428.89Probable calcium-activated outward-rectifying pota... [more]
KCO2_ARATH1.421e-1340.45Probable calcium-activated outward-rectifying pota... [more]
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Properties
Property NameValue
Genbank descriptionC31402D09EF CTVClemen1 Citrus clementina cDNA clone C31402D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875300 ID=FC875300; Name=FC875300; organism=Citrus clementina; type=EST; length=713bp
GAGGGCTCACACACACTCACTTCATAAAGTTTCTTCCTTGATCTGGGGGT
GGTCTTGTGTCAGCTTGATAGTCTGAGTCTGCTTTTGCTATCCTCTAATG
GCCTCCAATGGTGCAAATCAGCCGCTGCTCTCAGGATTTGTTGATTCAAC
GCCTCAAACAAATAATAAAGATGCTCCCAAGAGAAGAAGGCTTCGTCGGT
GTAGAAGTGCTCCCCAGACTGATGTTGCTGCTCTAGACATAAATGAAAAA
GACTCAACTCACCTTTCTGAGTCCCTTTTTGGCAAACCCCGCCCAAATTT
TAAGAGGGTACTTGTCTACCTGGCTGCCTACCTTGGTGGGGGGTCATTAT
CCTTCTATGCTGTCAACAGTCAAATCGAAGGACTAAAAACCAATGAAATT
CTAGATTCTATTTATTTCTGCATCGTGACAATGACCACTGTAGGGTATGG
AGACCTTGTGCCTAATAGTGTCGTTTCGAAACTACTTTCCTGTGCTTTTG
TTTTCACAGGGATGGGTCTAGTTGGTATGTTTCTGAGCAAAGCAGCCGAC
TATCTGGTCGACAAGCAGGAAATATTGCTGGTTAAAGCCCTACACAGGTA
TCAAAAAGTTGGCCCGACTGATATTCTAAAGGAGATTGAAACCAANCAAG
TGAGATACAATGCATCATCATGTTGGTCCTTGAGTTGGTTCTCATTCTCG
TTGGGACATCTTC
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