FC875306

Overview
NameFC875306
Unique NameFC875306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10199 contig Ccv1_Contig10199:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875306 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.881e-25
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 2 
Query:  284 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKL 610
            N VKF V DA LT F+L SNNNL Y L+LN++IRN    IG+HYDR EA VYY ++RL +VP+  FY G KNT  L  +FEGQ ++L  G   + +  +   GV+ IDVKL
Sbjct:    5 NDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKL 115
The following BLAST results are available for this feature:
BLAST of FC875306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP24_ARATH1.881e-2552.25Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
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Properties
Property NameValue
Genbank descriptionC31402E04EF CTVClemen1 Citrus clementina cDNA clone C31402E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875306 ID=FC875306; Name=FC875306; organism=Citrus clementina; type=EST; length=667bp
CGCTCATTGTCTCTTCTTCTTGCTTCCCAAAAAGTGCTCACAAATTATAT
AACTTCTCAAGCTTCCTTCACTAGTCATCATGGCTGAACAACAAGCTCCT
TTGAATGGAGCTTATTATGGTCCGGCGGTGCCACCGCCAACGAAGCACTA
CCACCGCCCTGGCCGCGGCGGAGGCTGCGGCGGCTGCTGCTGCCTATTCA
CCCTTTTGATCAAAATCATCGTCTCCGCCGTGTTGATCCTTGGCCTCGCA
GCCTTGATCGTATGGCTCATATTCCGCCCCATCAACAAGGTCAAGTTCCA
CGTCACCGATGCCTCTCTCACTGAATTCAACCTCACTTCCAACAACAACC
TCAACTACAAGCTTGCCCTTAACATCACCATCAGAAACCCTAACAAAAAG
ATCGGCGTACACTACGACCGCATCGAAGCTAGGGTTTACTACGACGACAA
GAGGTTAACATCTGTTCCTCTCACTCCATTTTATCAAGGACACAAAAACA
CCAGCTATTTGAACCCCGTTTTCGAAGGGCAGCAGATTCTGCTTGGCGGT
GCACTTAGAGACTATAATAAAGAGAATAATGCCGGAGTTTTTAGCATCGA
CGTGAAGCTTATATGAAAGTTAGGTTCAAGTTGGGACAAATCAAGACTCC
CAAGTTCAAGCCCACGA
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