FC875333

Overview
NameFC875333
Unique NameFC875333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:514..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 5.915e-95
Identity = 166/199 (83.42%), Postives = 175/199 (87.94%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVVLS DPKPIQGDWNGAGAH NYSTKSMRN+GG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTFKWGVA RGASIRVGRDTEKEG+
Sbjct:  128 IEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.318e-94
Identity = 166/199 (83.42%), Postives = 175/199 (87.94%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQK+VKWP+                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWE+QVGP+VGISAGD+LWV+RYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGGFEVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVA RGASIRVGRDTEK G+
Sbjct:  128 IEQEYTLLQKEVKWPIGWPVGGFPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 6.540e-94
Identity = 166/199 (83.42%), Postives = 174/199 (87.44%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQ  VKWP+                   ADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVV+SFDPKPIQGDWNGAGAH NYSTKSMRNDGG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVA RGASIRVGRDTEKEG+
Sbjct:  128 IEQEYTLLQNSVKWPIGWPVGGYPGPQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.589e-92
Identity = 164/199 (82.41%), Postives = 172/199 (86.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKDV WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTK+MRNDGG+EVIK AIEKLG RH EHIAAYGEGNERRLTG+HETADINTF WGVA RGASIRVGRDTEK G+
Sbjct:  128 IEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 1.781e-91
Identity = 160/199 (80.40%), Postives = 174/199 (87.44%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQK+V WP+                   ADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTK+MR DGG+EVIKKAI+KLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVA RGASIRVGRDTEKEG+
Sbjct:  128 IEQEYTLLQKEVNWPVGWPIGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.326e-91
Identity = 159/199 (79.90%), Postives = 170/199 (85.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD  WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTGKHET DINTF WGVA RGAS+RVGRDTEK+G+
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 3.968e-91
Identity = 160/199 (80.40%), Postives = 172/199 (86.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKDVKWP+                   ADK++GRD+VDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA D++WVARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG+E+IKKAI+KLGLRH EHIAAYGEGNERRLTG HETADINTF WGVA RGASIRVGRDTEKEG+
Sbjct:  128 IEQEYTLLQKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 8.839e-91
Identity = 160/199 (80.40%), Postives = 171/199 (85.93%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD+ WPL                   ADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AGVVLSFDPKPI+GDWNGAGAH NYSTKSMR DGG+EVI KAIEKLG +H EHIAAYGEGNERRLTG+HETADINTF WGVA RGASIRVGRDTEK G+
Sbjct:  128 IEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.154e-90
Identity = 161/199 (80.90%), Postives = 172/199 (86.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD+ WP+                   A+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP+VGISAGD+LWVARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG+EVIKKAIEKLG RH+EHIAAYGEGNERRLTG+HETADI+TF WGVA RGASIRVGRDTEKEG+
Sbjct:  128 IEQEYTLLQKDIHWPIGWPLGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSVGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIEKLGKRHNEHIAAYGEGNERRLTGRHETADISTFFWGVANRGASIRVGRDTEKEGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.969e-90
Identity = 158/199 (79.40%), Postives = 172/199 (86.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD+ WPL                   ADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAHAN+STKSMR +GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADIN F WGVA RG+SIRVGRDTEK+G+
Sbjct:  128 IEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGK 326
The following BLAST results are available for this feature:
BLAST of FC875333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA1_ALNGL5.915e-9583.42Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_VITVI1.318e-9483.42Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA2_VITVI6.540e-9483.42Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA_VIGAC3.589e-9282.41Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_LOTJA1.781e-9180.40Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA3_MEDSA2.326e-9179.90Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLN11_ARATH3.968e-9180.40Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA1_MEDSA8.839e-9180.40Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA_LUPLU1.154e-9080.90Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA3_PEA1.969e-9079.40Glutamine synthetase root isozyme A OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionC31402G07EF CTVClemen1 Citrus clementina cDNA clone C31402G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875333 ID=FC875333; Name=FC875333; organism=Citrus clementina; type=EST; length=634bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACT
GGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCNTA
CCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAGGG
TTACTTTGAGGACAGGAGACTGCTTCTACATGGA
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