FC875336

Overview
NameFC875336
Unique NameFC875336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHRS2_HUMAN (Dehydrogenase/reductase SDR family member 2 OS=Homo sapiens GN=DHRS2 PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 85/195 (43.59%), Postives = 118/195 (60.51%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQ-KGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQALLGNDA 681
            +VAVVT ST GIG  +A RL  +GA VVISSRKQ+NVD+A+ KL+  G+ V GI+CHV   + R+ L+ K +E  G +D  V +A VNP     L T E + DK+  +NVKS  LL+    P+M+ +  +V+ +SSIA Y P  A+ +Y V              E+AP D RVNCV PG + T F++   GN++
Sbjct:   15 RVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLPYMENRRGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFSKVFHGNES 209          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.126e-39
Identity = 83/200 (41.50%), Postives = 121/200 (60.50%), Query Frame = 1
Query:   76 VNMAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            V   K  + KVA+VTAST GIGL +A RL  +GA VV+SSRKQ+NVD+ V  L+  G+ V G +CHV   + R+ L+   V  +G +D+ V NAAVNP+  +++   E V DK+  +NVK+++L+ +   P M+K  G SV+ +SS+  Y P   +  Y V              E+AP + RVNC+APG + T+F+Q L
Sbjct:    6 VERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVL 205          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 87/191 (45.55%), Postives = 119/191 (62.30%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEM-APDTRVNCVAPGFVPTHFAQAL 666
            KVA+VTAST GIGL +A RL  +GA VVISSRKQ+NVD+AV  L+A G+ V G +CHV   + R+ L+   +  +G ID+ V NAAVNP+   L+   E V DK+ +INVK+  L+ +   P M+K  G SVV ++SIA + P S +  Y V              E+ A + RVNC+APG + T F++AL
Sbjct:   15 KVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNVDRAVAALQAEGLSVTGTVCHVGKAEDRERLVATALNLHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKAL 205          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.647e-38
Identity = 86/205 (41.95%), Postives = 122/205 (59.51%), Query Frame = 1
Query:   67 MEKVNMAKR--FQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQAL 666
            M    MA+R     KVA+VTAST GIG  +A RL  +GA VV+SSRKQ+NVD+AV  LK  G+ V G +CHV   + R+ L+   V+ +G +D+ + NAAV+P+   L+   E V DK+ ++NVK++ LL +   P M K  G S+V +SSIA Y P  ++  Y V              E+A  + RVNC+APG + T F++ L
Sbjct:    1 MASCGMARRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAESNVRVNCLAPGLIRTSFSRVL 205          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38
Identity = 85/191 (44.50%), Postives = 116/191 (60.73%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            KVA+VTAST GIG  +A RL  +GA VV+SSRKQ+NVD+AV  L+  G+ V G +CHV   + R+ L+   V+ +G ID+ V NAAVNP+   L+   E V DK  +INVK+  L+ +   P M+K  G SVV +SSIA + P    + Y V              E+AP + RVNC+APG + T F++ L
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRML 205          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 84/191 (43.98%), Postives = 116/191 (60.73%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            KVA+VTAST GIG  +A RL  +GA VV+SSRKQ+NVD+AV  L+  G+ V G +CHV   + R+ L+   V+ +G ID+ V NAAVNP+   ++   E V DK  +INVK+  L+ +   P M+K  G SVV +SSIA + P    + Y V              E+AP + RVNC+APG + T F++ L
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRML 205          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 83/191 (43.46%), Postives = 121/191 (63.35%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            KVA+VTAST GIGL +A RL  +GA VVISSRKQ+NVD+AV  L+  G+ V G++CHV   + R+ L++  ++ +  ID+ V NAAVNP+  +L+   E V +K+  INV +S ++++   P M+K  G SVV +SS+AG+    ++  Y V              E+AP + RVNC+APG + THF+  L
Sbjct:   15 KVALVTASTDGIGLAIARRLAEDGAHVVISSRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQGIDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFSSVL 205          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 81/191 (42.41%), Postives = 118/191 (61.78%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            KVA+VTAST GIG  +A RL  +GA VV+SSRKQ+NVD+AV  L+  G+ V GI+CHV   + R+ LI   ++++  ID+ V NAAVNP+  +L+   E V DK+  INV ++ ++++   P M+K  G SVV + S+AG+    ++  Y V              E+AP + RVNC+APG + T F+  L
Sbjct:   15 KVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRGIDILVSNAAVNPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTRFSSVL 205          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DR4L2_HUMAN (Dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 80/194 (41.24%), Postives = 112/194 (57.73%), Query Frame = 1
Query:   61 IQMEKVNMAKR--FQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCV 627
            +++    M +R     KVA+VTAST GIG  +A RL  + A VV+SSRKQ+NVD+AV  L+  G+ V G +CHV   + R+ L+   V+ +G ID+ V NAAVNP+   L+   E V DK  +INVK+  L+ +   P M+K  G SVV +SSIA + P    + Y V              E+AP + RVNC+
Sbjct:   15 VRLASSRMTRRDPLTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVNCL 208          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 61/188 (32.45%), Postives = 102/188 (54.26%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQK-NVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPT 648
            + +GKVAVVT +++GIG  +A+ L  +GA+VV++    K   D  VE + A G + I +   VS     + L++  V+++GR+DV V N+ V  +AA + +  E    +++++NV   +L  Q A+ H+ +G S++ ISS+         A+Y                E+AP   RVN V+PG+V T
Sbjct:    3 KLEGKVAVVTGASKGIGAAIAKALAKDGAAVVVNYASSKAGADAVVEAITAAGGKAIAVQADVSQAVQARGLVEAAVQQFGRLDVLVNNSGVYEFAA-IEEVTEEHYRRIFDVNVLGVLLATQAASKHLGEGGSIINISSVVTDVLMPTSAVYSGTKGALNAISGVLANELAPRKIRVNVVSPGYVVT 189          
The following BLAST results are available for this feature:
BLAST of FC875336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
DHRS2_HUMAN1.074e-3943.59Dehydrogenase/reductase SDR family member 2 OS=Hom... [more]
DHRS4_PIG3.126e-3941.50Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]
DHRS4_RABIT6.965e-3945.55Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
DHRS4_BOVIN2.647e-3841.95Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHRS4_PONAB4.514e-3844.50Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN7.700e-3843.98Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
DHRS4_RAT1.715e-3743.46Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
DHRS4_MOUSE1.112e-3642.41Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DR4L2_HUMAN2.563e-3341.24Dehydrogenase/reductase SDR family member 4-like 2... [more]
Y182_METEA2.489e-2032.45Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]

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Properties
Property NameValue
Genbank descriptionC31402G10EF CTVClemen1 Citrus clementina cDNA clone C31402G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875336 ID=FC875336; Name=FC875336; organism=Citrus clementina; type=EST; length=683bp
GATCTAAGGGTTATTCAGAACTGAAAATCCTCATCACCAAAAACAGTAAT
TCATTGGCTTATCCAAATGGAGAAGGTGAACATGGCAAAAAGATTCCAAG
GGAAGGTTGCGGTCGTGACGGCTTCGACTCAAGGCATTGGCTTAGGCGTC
GCTGAAAGACTCGGTTTGGAAGGCGCCTCTGTTGTTATCTCCTCTAGAAA
GCAGAAAAATGTGGACAAAGCAGTTGAGAAACTCAAAGCTCTAGGAATCG
AGGTTATTGGAATTATTTGTCATGTATCAAACGAACAACATAGGAAGAAT
CTCATAGACAAAACTGTTGAGAAATATGGAAGAATAGATGTGTTTGTTTT
AAATGCTGCTGTCAATCCCTATGCTGCTGATCTTCTGAAAACCAAAGAAT
CTGTACTGGACAAGTTATGGGAAATCAATGTCAAATCCAGTATACTTCTT
ATGCAGGATGCTGCACCTCACATGCAGAAGGGTTCTTCAGTCGTTTTCAT
TTCCTCCATAGCTGGTTATCAACCACCGTCAGCCATGGCTATGTATGGAG
TGACTAAGACAGCCCTGTTAGGTTTGACTAAGGCCCTCGCGGCTGAGATG
GCCCCAGATACTCGTGTGAATTGTGTTGCTCCTGGTTTTGTGCCGACACA
CTTTGCTCAGGCCCTTCTAGGCAATGATGCTGT
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