FC875346
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.218e-41 Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 3 Query: 186 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPGRY 377 MSCNGCRVLRKGCSETCILR CLQWI++ E+QG+AT+F+AKFFGR+ L+SFI++VP+ QRP + Sbjct: 1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALF 64 HSP 2 Score: 83.1889 bits (204), Expect = 4.218e-41 Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 Query: 472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 609 ALFQSLLFEACGRTVNPV+GAVG+L + NWHVC+AAVETVL GGTL Sbjct: 62 ALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTL 107
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.326e-41 Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = 3 Query: 186 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPGRY 377 MSCNGCRVLRKGCSE CILR C+QWI++PEAQG+AT+F+AKFFGR+ L+SFI+AVP+ Q P + Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALF 64 HSP 2 Score: 81.6481 bits (200), Expect = 9.326e-41 Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1 Query: 472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 609 ALFQSLL+EACGRTVNPV+GAVGLL +GNW+VC+AAVETVL GG+L Sbjct: 62 ALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.502e-40 Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 3 Query: 186 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPGRY 377 MSCNGCRVLRKGCSE CILR C+QWI+T +AQG+AT+F+AKFFGR+ L+SFI+AVP QRP + Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALF 64 HSP 2 Score: 80.1073 bits (196), Expect = 3.502e-40 Identity = 35/46 (76.09%), Postives = 44/46 (95.65%), Query Frame = 1 Query: 472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 609 ALFQSLL+EACGRTVNPV+GA+G+L +GNW++C+AAVETVL GG+L Sbjct: 62 ALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL 107
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 6.018e-33 Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 3 Query: 183 KMSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 368 +MSCNGCRVLRKGCSE C +R CLQWI + E+Q NAT+FLAKF+GR+ L++ + P H RP Sbjct: 2 RMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRP 63 HSP 2 Score: 69.707 bits (169), Expect = 6.018e-33 Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1 Query: 472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSG 600 A+F+SLL+EACGR VNP+ G+VGLL SGNWH+C+AAVE V+ G Sbjct: 64 AIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRG 106
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.250e-32 Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 3 Query: 183 KMSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPG 371 +MSCNGCRVLRKGCSE C +R CL WI +PEAQ NAT+FLAKF+GR+ L++ I A P H RPG Sbjct: 2 RMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPG 64 HSP 2 Score: 61.6178 bits (148), Expect = 2.250e-32 Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 Query: 475 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSG 600 +F+SLL EACGR VNP+ G+VGLL SGNW +C+ AVE V+ G Sbjct: 65 IFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.981e-32 Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 3 Query: 183 KMSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 368 ++SCNGCRVLRKGC++ C +R CLQWI + ++Q NATLFLAKF+GR+ LL+ I + P H RP Sbjct: 2 RISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRP 63 HSP 2 Score: 68.1662 bits (165), Expect = 4.981e-32 Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1 Query: 472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSG 600 A+F+SLL+EACGR VNPVDG+VGL+ SGNW C+AAV+ VL+G Sbjct: 64 AIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNG 106 The following BLAST results are available for this feature:
BLAST of FC875346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875346 ID=FC875346; Name=FC875346; organism=Citrus clementina; type=EST; length=696bpback to top |