FC875346

Overview
NameFC875346
Unique NameFC875346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875346_ssr152 microsatellite FC875346_ssr152:152..177. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875346_ssr98 microsatellite FC875346_ssr98:98..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.218e-41
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 3
Query:  186 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPGRY 377
            MSCNGCRVLRKGCSETCILR CLQWI++ E+QG+AT+F+AKFFGR+ L+SFI++VP+ QRP  +
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALF 64          

HSP 2 Score: 83.1889 bits (204), Expect = 4.218e-41
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1
Query:  472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 609
            ALFQSLLFEACGRTVNPV+GAVG+L + NWHVC+AAVETVL GGTL
Sbjct:   62 ALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTL 107          
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.326e-41
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = 3
Query:  186 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPGRY 377
            MSCNGCRVLRKGCSE CILR C+QWI++PEAQG+AT+F+AKFFGR+ L+SFI+AVP+ Q P  +
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALF 64          

HSP 2 Score: 81.6481 bits (200), Expect = 9.326e-41
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 609
            ALFQSLL+EACGRTVNPV+GAVGLL +GNW+VC+AAVETVL GG+L
Sbjct:   62 ALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107          
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.502e-40
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  186 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPGRY 377
            MSCNGCRVLRKGCSE CILR C+QWI+T +AQG+AT+F+AKFFGR+ L+SFI+AVP  QRP  +
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALF 64          

HSP 2 Score: 80.1073 bits (196), Expect = 3.502e-40
Identity = 35/46 (76.09%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 609
            ALFQSLL+EACGRTVNPV+GA+G+L +GNW++C+AAVETVL GG+L
Sbjct:   62 ALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL 107          
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.018e-33
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 3
Query:  183 KMSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 368
            +MSCNGCRVLRKGCSE C +R CLQWI + E+Q NAT+FLAKF+GR+ L++ +   P H RP
Sbjct:    2 RMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRP 63          

HSP 2 Score: 69.707 bits (169), Expect = 6.018e-33
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1
Query:  472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSG 600
            A+F+SLL+EACGR VNP+ G+VGLL SGNWH+C+AAVE V+ G
Sbjct:   64 AIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRG 106          
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.250e-32
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  183 KMSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPG 371
            +MSCNGCRVLRKGCSE C +R CL WI +PEAQ NAT+FLAKF+GR+ L++ I A P H RPG
Sbjct:    2 RMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPG 64          

HSP 2 Score: 61.6178 bits (148), Expect = 2.250e-32
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1
Query:  475 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSG 600
            +F+SLL EACGR VNP+ G+VGLL SGNW +C+ AVE V+ G
Sbjct:   65 IFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106          
BLAST of FC875346 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.981e-32
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  183 KMSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 368
            ++SCNGCRVLRKGC++ C +R CLQWI + ++Q NATLFLAKF+GR+ LL+ I + P H RP
Sbjct:    2 RISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRP 63          

HSP 2 Score: 68.1662 bits (165), Expect = 4.981e-32
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1
Query:  472 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSG 600
            A+F+SLL+EACGR VNPVDG+VGL+ SGNW  C+AAV+ VL+G
Sbjct:   64 AIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNG 106          
The following BLAST results are available for this feature:
BLAST of FC875346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD39_ARATH4.218e-4171.88LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD38_ARATH9.326e-4171.88LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH3.502e-4071.88LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD40_ARATH6.018e-3362.90LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH2.250e-3268.25LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH4.981e-3261.29LOB domain-containing protein 42 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31402H08EF CTVClemen1 Citrus clementina cDNA clone C31402H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875346 ID=FC875346; Name=FC875346; organism=Citrus clementina; type=EST; length=696bp
GAATATCTGTTGAGTGTCGATCTAGCTTCTTCATTCAACAAGACAAGTCA
CAACCACCTCCGTCACTCACCCACTAGTACTCACTAGTACTGTCTGCAAC
AAACAAACAGCAGCGAGAACTAGAAGGGGTTTGGTCCGAAATTCAAAGAG
CAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAAGATGAGCTGCAACGGG
TGCAGGGTTCTACGGAAGGGATGCAGCGAGACGTGCATACTGAGGTCGTG
CTTGCAGTGGATCGACACTCCCGAAGCACAAGGCAACGCCACTCTGTTTC
TCGCCAAATTCTTCGGCCGCAGCGATCTCTTGTCCTTCATCGCCGCCGTT
CCCCAACACCAGCGACCGGGTAGGTATAACGTGACAATGGATTAACAAGC
AAACGAATTAAAAATTAAAAAAAATAAATAAAAGAAAGAAACTGGTCCTT
TTTGGTTTCGGTTTTGTTGCAGCTTTGTTTCAGTCGTTGTTGTTTGAGGC
GTGCGGGCGAACGGTGAACCCCGTGGACGGAGCGGTGGGGTTACTGTCAA
GTGGTAACTGGCACGTGTGCCGGGCGGCGGTGGAGACGGTGCTGTCAGGG
GGGACTCTGATCAGACCCACAGCGCCAGCAGCAACGACCACTCGGACGGG
GCCTAAACCTAATAATTTTGATAAAGATGAANGTTCGCCGCCCGCT
back to top