FC875353

Overview
NameFC875353
Unique NameFC875353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8026 contig Ccv1_Contig8026:677..1380. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 67/230 (29.13%), Postives = 109/230 (47.39%), Query Frame = 3
Query:    3 RALEKI---AQVNKTKLPDGKLVAHRSTLPTGERAPPELVHLLSSNGGNKTTEXXXXXXXXXXXXXXXXARTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH-------HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            RALE +   A++N+ +LP G+LV   S+   G  +  ++ +LLS +                        +TTI         +F+YY +VL  + L      C   L FS+        P   + Y D   T+LAE PGL++  ++++  GRK ++ + + +  +F   L         T L+F AR  + GAF  + +Y  E+YPT++R+ G G  +AM RIG +V P
Sbjct:  272 RALETLQAAARMNRVQLPTGRLV---SSTKAGSESRGDIANLLSPD----------------------LRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGL-FSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTP 475          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  207 TTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL---------YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            TT+      F N+F+YY +VLL +EL      C             +L         Y+D   T+L+E PG+L+   ++D  GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ R+ G G  + M R+G ++ P
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITP 476          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  207 TTIXXXXXXFGNSFAYYAVVLLISEL-------------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            TT+      F N+F+YY +VLL +EL              +++ +C     +         Y+D   T+L+E PG+L+   ++D  GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ R+ G G  + M R+G ++ P
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEED----YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITP 476          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  207 TTIXXXXXXFGNSFAYYAVVLLISEL-------------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            TT+      F N+F+YY +VLL +EL              +++ +C     +         Y+D   T+L+E PG+L+   ++D  GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ R+ G G  + M R+G ++ P
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEED----YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITP 476          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  207 TTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL---------YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            TT+      F N+F+YY +VLL +EL      C             +L         Y+D   T+L+E PG+L+   ++D  GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ R+ G G  + M R+G ++ P
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITP 476          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 53/162 (32.72%), Postives = 79/162 (48.77%), Query Frame = 3
Query:  207 TTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL---------YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            TT+      F N+F+YY +VLL +EL      C             +L         Y D   T+L+E PGLL+   ++D  GRK ++ I F + S   LL  +    N+LT   LF AR  + G F  + +Y  E+YPT+ R+ G G  + M R+G ++ P
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTV-FLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITP 476          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  207 TTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL---------YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            TT+      F N+F+YY +VLL +EL      C             +L         Y+D   T+L+E PG+L+   ++D  GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ R+ G G  + M R+G ++ P
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTL-LLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITP 476          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOPL_DANRE (Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 68/212 (32.08%), Postives = 91/212 (42.92%), Query Frame = 3
Query:   66 HRSTLPTGERAPPELVHLLSSNGGNKTTEXXXXXXXXXXXXXXXXARTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH---HPQDANL----------YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            +   LP GE   PE+     +  GN  T                  RT++      F  SF+YY  VL  SEL   +  C +     H   H Q+  L          Y    I+ L E+  + L  IL++  GRK S+ I+  LS  F + +    + +  T LLF  R  V   F V  IY AE+YPTSVRS G G   +  RIGGM+ P
Sbjct:  266 NNGVLPEGELREPEV-----TERGNAVT-----------LISSAFRRTSLLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLNIILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFLLRSVVSMNFNVVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAP 461          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 71/239 (29.71%), Postives = 104/239 (43.51%), Query Frame = 3
Query:    9 LEKIAQVNKTKLPDGKLVAHRSTLPTGERAPPELVHLLSSNGGNKTTEXXXXXXXXXXXXXXXXARTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRC------------------RSPL---MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            LE++A++N++ +P+GKLV      P  E+       LL +                         RTT+       G SFAYY V+L  +EL   D  C                  +SP    MF+  P D   Y    I+++ EI    L  + ++  GR+LS++I    + LF L L    S+    G LF  R  V   F    IY AE+YPT++R+ G G + ++ RIG MV P
Sbjct:  242 LERVAKMNRSVMPEGKLVE-----PVLEKRG-RFADLLDAK----------------------YLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFA--PSD---YRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAP 447          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: SVOPL_MOUSE (Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 71/239 (29.71%), Postives = 99/239 (41.42%), Query Frame = 3
Query:    9 LEKIAQVNKTKLPDGKLVAHRSTLPTGERAPPELVHLLSSNGGNKTTEXXXXXXXXXXXXXXXXARTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPL-------------------MFSH--HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            LE IA++N++ +P+G+LV      P  E+       LL S                         RTT+       G SFAYY V+L  +EL   D  C S                      + H   P D   Y    I++L EI    L  + ++  GR+LS++I    + LF L L    S+    G LF  R  V   F    IY AE+YPT +R+ G G + ++ RIG MV P
Sbjct:  242 LESIAKMNRSVMPEGQLVE-----PILEKRG-RFADLLDSK----------------------YLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCHIFAPSD---YRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAP 449          
The following BLAST results are available for this feature:
BLAST of FC875353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YOU1_CAEEL1.712e-1929.13Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOP_RAT2.314e-1632.10Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_PONAB2.314e-1630.72Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN2.314e-1630.72Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_MOUSE3.022e-1632.10Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOP_XENLA5.155e-1632.72Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_BOVIN5.155e-1632.10Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
SVOPL_DANRE4.364e-1532.08Putative transporter SVOPL OS=Danio rerio GN=svopl... [more]
SVOPL_HUMAN6.302e-1429.71Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]
SVOPL_MOUSE4.085e-1329.71Putative transporter SVOPL OS=Mus musculus GN=Svop... [more]

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Properties
Property NameValue
Genbank descriptionC31403A03EF CTVClemen1 Citrus clementina cDNA clone C31403A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875353 ID=FC875353; Name=FC875353; organism=Citrus clementina; type=EST; length=704bp
ATCGTGCTCTGGAGAAAATTGCTCAAGTTAACAAAACAAAGCTCCCAGAT
GGCAAGCTTGTCGCTCATAGATCAACTCTACCGACTGGAGAACGTGCTCC
TCCAGAACTAGTTCATCTACTTTCATCCAATGGTGGAAACAAAACCACAG
AGGGCAAATCAGGCTTATCGTTGTTTCTTATGCTTTTCTCTTCAAAATTA
GCTAGAACAACCATTCTCCTGTGGTTGCTACTCTTTGGAAATTCATTCGC
ATATTATGCTGTTGTCCTGCTGATCTCCGAGCTGAGCAGCCTAGATACTA
GATGTCGCTCACCTTTGATGTTTTCGCATCATCCCCAGGATGCTAATCTC
TATATAGACGAATTCATCACTAGCTTGGCAGAGATTCCTGGACTTCTTTT
GGCTGCAATACTTGTGGACACAGCTGGGCGCAAGCTTTCCATTACCATTA
TGTTCACCTTATCTTGCCTTTTTCTACTACCACTGGTTACCTATCAGTCC
AATATTTTAACAACAGGCTTGCTGTTTGGGGCTCGCATGTGTGTCATGGG
TGCCTTTACAGTTTCCTTAATTTATGCTGCAGAGATCTATCCAACTTCAG
TGAGATCAACGGGTGCTGGAGCTGCCAACGCTATGGGAAGAATCGGTGGC
ATGGTATGCCCTCTGGTAGCGGTTGCACTGGTGGCCATTGCCATCAATGA
CTGC
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