FC875356

Overview
NameFC875356
Unique NameFC875356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9479 contig Ccv1_Contig9479:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875356 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28
Identity = 88/231 (38.10%), Postives = 110/231 (47.62%), Query Frame = 1
Query:  121 VASHAAISPELYWKTVLPNSPMPKAVKDLLQPDVLEDKSTSVNVGKGGVN----------------------VDAGKXXXXXXXXXXXXXXXXXXXXXXXD-----KRXXXXXXXXXXXXXXXXXXXPVYVGV----SPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTS--NGAT-FLSRQAAKSTPFSSDKLPEIFYQFSVKPGSVEAEIC-RTHQECE 708
            VA  A ++PE YW T LPN+P+P ++ +LL  D  ++KST+V VGKGGVN                      VD GK                             KR                   P+YVGV    +PF Y YAA E QLHDDPN ALFFLEKDL  G +MN+ F       G T FL R  A++ PF S+K  E   +FSV+ GS EAE+  +T +ECE
Sbjct:   17 VAIAADLTPERYWSTALPNTPIPNSLHNLLTFDFTDEKSTNVQVGKGGVNVNTHKGKTGSGTAVNVGKGGVRVDTGKGKPGGGTHVSVGSGKGHGGGVAVHTGKPGKRTDVGVGKGGVTVHTRHKGRPIYVGVKPGANPFVYNYAAKETQLHDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECE 247          
BLAST of FC875356 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 1
Query:  421 PVYVGVSPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFYQFSVKPGSVE-AEICRTHQECE 708
            PV+V V+PF Y YAA E QLHDDPN ALFFLEKDLHPG  M +HFT T+ G  FL R  A + PFSS+K+PEI  +FSVKPGSVE AE+ +T ++CE
Sbjct:  185 PVHVNVAPFIYNYAATETQLHDDPNVALFFLEKDLHPGKTMAVHFTATTAGEKFLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCE 281          
BLAST of FC875356 vs. ExPASy Swiss-Prot
Match: BURP2_ORYSJ (BURP domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=BURP2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  460 AANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFYQFSVKPGSVEAE-------ICRTHQECEDLALKKQNMCTS 744
            AA+ ++  +D   ++FFLEKDL PG KM LHFT+ + GA  L R  A S PF+S+KLPEI  Q S+  GS  A+       +C   +   + A K ++ C +
Sbjct:   52 AASASKDKEDTVGSVFFLEKDLFPGSKMTLHFTRATAGAALLPRGRADSVPFASEKLPEILSQLSIPAGSPTADAMRSTLAVCEAARIASETAPKHKHYCAT 153          
BLAST of FC875356 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.504e-13
Identity = 41/76 (53.95%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  484 DDPNTALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFYQFSVKPGSVEAEICR-THQECE 708
            +D    +FFLEKDL PG KM LHFT+ + GA  L R  A S PF+S+KLPEI  Q SV  GS  A+  R T  ECE
Sbjct:   21 EDTVNNVFFLEKDLFPGSKMTLHFTRATAGAALLPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECE 96          
BLAST of FC875356 vs. ExPASy Swiss-Prot
Match: BURP1_ORYSJ (BURP domain-containing protein 1 OS=Oryza sativa subsp. japonica GN=BURP1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  436 VSPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFYQFSVKPGSVEAE-ICRTHQECE 708
            +SP + V +A++    +D    +FFLEKDL PG KM LHFT+ + GA  L R  A+S PF+S++LPEI  Q S+   S  A+ +  T  ECE
Sbjct:   46 ISPASSVGSASK----EDTVGNVFFLEKDLFPGSKMTLHFTRATAGAALLPRGRAESVPFASERLPEILSQLSIPAVSPTADAMWSTLAECE 133          
BLAST of FC875356 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  460 AANENQLHDDPNT-ALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFYQFSVKPGSVEAEICRTH-QECE 708
            A+ E+   D+ +T A+FFLEKDL PG K+ LHFT+    A  L R  A + PF+S+KLPEI  Q SV  GS  AE  RT   ECE
Sbjct:   82 ASQEDTDMDEVSTDAVFFLEKDLFPGSKITLHFTRGGACAMVLLRGRADAIPFASEKLPEILTQLSVPAGSRAAEDMRTTLAECE 166          
BLAST of FC875356 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  475 QLHDDPNTALFFLEKDLHPGMKMN--LHFTQ--TSNGATFLSRQAAKSTPFSSDKLPEIFYQFSVKPGSVE-AEICRTHQECE 708
            +L  DP+ ALFFLEK+L  G K+N  LHF     +  + FL R  A S PFSS +LPEI  +F V+PGS + AE+  T Q+CE
Sbjct:  353 ELLKDPDMALFFLEKNLQQGKKINNALHFANLLATTNSKFLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCE 435          
BLAST of FC875356 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  424 VYVGVSPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFYQFSVKPGSVEAEICR-THQECE 708
            V +   P  Y  AA++ Q   DP   LFFLE +L     + LHF     G  FL R  A + PFSS  L EI  +F V+PGSV+A + + T  ECE
Sbjct:   83 VQIRYGPNIYGLAASQ-QFFKDPTMGLFFLETNLQSSKSIKLHFANMMAGTKFLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECE 177          
The following BLAST results are available for this feature:
BLAST of FC875356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RD22_ARATH2.906e-2838.10Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP3_ORYSJ2.906e-2863.92BURP domain-containing protein 3 OS=Oryza sativa s... [more]
BURP2_ORYSJ3.449e-1340.20BURP domain-containing protein 2 OS=Oryza sativa s... [more]
BURP6_ORYSJ4.504e-1353.95BURP domain-containing protein 6 OS=Oryza sativa s... [more]
BURP1_ORYSJ1.892e-1144.57BURP domain-containing protein 1 OS=Oryza sativa s... [more]
BURP8_ORYSJ3.228e-1150.59BURP domain-containing protein 8 OS=Oryza sativa s... [more]
BURPH_ORYSJ4.216e-1149.40BURP domain-containing protein 17 OS=Oryza sativa ... [more]
BURP5_ORYSJ9.392e-1141.67BURP domain-containing protein 5 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC31403A07EF CTVClemen1 Citrus clementina cDNA clone C31403A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875356 ID=FC875356; Name=FC875356; organism=Citrus clementina; type=EST; length=744bp
GATGAAGCCTAGATTTTAGATTACATACTATCTTGTATTCTGAGTGTCTT
TTGAAACATACTCAAAGCTATAATGGAGTTTCGCTTGTTGCCCATCCTTG
CTTTCCTCAGTCTAGCACTGGTGGCAAGTCATGCTGCCATTTCTCCTGAG
CTTTACTGGAAAACTGTATTGCCAAATTCCCCGATGCCAAAAGCTGTCAA
AGATCTTCTACAGCCAGATGTGCTGGAAGACAAAAGCACCTCTGTCAACG
TAGGGAAGGGTGGTGTCAATGTGGATGCAGGGAAAGGAAAGCCCGGTGGT
GGCACCCATGTGAATGTTGGGGGTAAGGGCGTTGGTGTAAACACTGGAAA
GCCTGACAAAAGAACCAGTGTTGGTGTTGGCAAAGGAGGAGTATCCGTAA
GTACAGGACACAAGGGAAAGCCAGTTTATGTTGGAGTAAGCCCATTCAAC
TATGTATATGCTGCAAATGAGAACCAACTCCATGATGACCCGAATACAGC
TCTTTTCTTCTTGGAAAAGGACTTGCATCCTGGGATGAAGATGAACTTGC
ACTTCACTCAAACTTCAAATGGAGCAACTTTCTTATCTCGCCAAGCTGCC
AAATCAACTCCTTTCTCGTCTGACAAATTGCCTGAGATCTTTTACCAGTT
TTCCGTGAAACCTGGATCAGTTGAAGCTGAAATATGCAGAACACATCAAG
AGTGTGAAGACCTGGCATTAAAGAAGCAGAATATGTGCACTTCA
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