FC875379

Overview
NameFC875379
Unique NameFC875379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875379_ssr452 microsatellite FC875379_ssr452:452..463. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10219 contig Ccv1_Contig10219:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 1.547e-81
Identity = 149/194 (76.80%), Postives = 173/194 (89.18%), Query Frame = 3
Query:  111 MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            MA+H+ALA +RIP  TR PSKT+HSFP+QC++KRL+V EF+GL++ +  +Y   ARD+SF+D V AQLT K A GS  VK  TVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+VVNDSGGVKNASHLLKYDS+LGTFKA+VKI++NETI+VDGK IKVVS+RDPL+LPWAELGIDIVIEGTGVFVDGPGAG
Sbjct:    1 MATHAALASTRIPTNTRFPSKTSHSFPSQCASKRLEVGEFSGLKSTSCISYVHSARDSSFYDVVAAQLTSK-ANGSTAVKGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 193          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.234e-80
Identity = 152/195 (77.95%), Postives = 169/195 (86.67%), Query Frame = 3
Query:  111 MASHSALAPSRIPAITRIPSKTT-HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            MA+H+ALA SRIP   R+ SK+  HSFP QCS+KRL+VAEF+GLR ++         +ASFFDAV AQ+ PK    S PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+VVV+NDSGGVKNASHLLKYDS+LGTFKA+VKIVDNETISVDGKLIKVVSNRDPL+LPWAELGIDIVIEGTGVFVDGPGAG
Sbjct:    1 MATHAALAVSRIPVTQRLQSKSAIHSFPAQCSSKRLEVAEFSGLRMSSIGG------EASFFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 189          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.810e-80
Identity = 152/196 (77.55%), Postives = 171/196 (87.24%), Query Frame = 3
Query:  111 MASHSALAPSRIPAITRIPSKTT--HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            MASH+ALAPSRIPA TR+ SK +  +SF TQCS KRLDVA+F+GLR++   T+    R+ASF D + AQLT K   G+ PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK+A+HLLKYDS+LGTFKADVKI+DNET S+DGK IKVVSNRDPL+LPWAELGIDIVIEGTGVFVDGPGAG
Sbjct:    1 MASHAALAPSRIPASTRLASKASQQYSFLTQCSFKRLDVADFSGLRSSNSVTFT---REASFHDVIAAQLTTK-PTGAAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 192          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.233e-71
Identity = 135/165 (81.82%), Postives = 149/165 (90.30%), Query Frame = 3
Query:  198 CSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            C +K+ +VAEFAGLR++   T++   +++SFFD V+AQLTPK    S PVK ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDS+LGTFKADVKIVDNETISVDGK IKVVS+RDPL+LPWAELGIDIVIEGTGVFVDGPGAG
Sbjct:    1 CLSKKFEVAEFAGLRSSGCVTFSN--KESSFFDVVSAQLTPKTTR-STPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 162          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.726e-48
Identity = 101/159 (63.52%), Postives = 117/159 (73.58%), Query Frame = 3
Query:  219 VAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            ++EF+GLR++A       A    F  AV+ + T  V     P +  T AKLKVAINGFGRIGRNFLRCWHGR D SPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V +  ISVDGK+IKVVS+R+P  LPW ELGID+VIEGTGVFVD  GAG
Sbjct:   19 LSEFSGLRSSASLPMRRNATSDDFMSAVSFR-THAVGTSGGPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAG 176          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 99/157 (63.06%), Postives = 116/157 (73.89%), Query Frame = 3
Query:  222 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            +EF+GL  ++      G+ D   F  V+ Q T  V            AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK   +  ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAG
Sbjct:   21 SEFSGLHTSSLPFGRKGSDDLMAF--VSFQ-TNAVGGKRSSQNGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAG 174          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 96/156 (61.54%), Postives = 114/156 (73.08%), Query Frame = 3
Query:  225 EFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            EF+GLR+++ +        +  F ++ +  T  + +     K  T AKLKVAINGFGRIGRNFLRCWHGRKDSPLD++ +ND+GGVK ASHLLKYDS LG F ADVK      ISVDGK+I+VVSNR+P  LPW ELGIDIVIEGTGVFVD  GAG
Sbjct:   14 EFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSGGYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAG 169          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 98/158 (62.03%), Postives = 118/158 (74.68%), Query Frame = 3
Query:  222 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            +EF+GLR ++   +     D     +V A  T  +  G+   K+  V AKLKVAINGFGRIGRNFLRCWHGRKDSPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V  + ISVDGK+I+VVS+R+P+ LPW +LGID+VIEGTGVFVD  GAG
Sbjct:   12 SEFSGLRTSSAIPFGRKTNDDLL--SVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAG 165          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 98/158 (62.03%), Postives = 113/158 (71.52%), Query Frame = 3
Query:  222 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAK-LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            +EF+GLR ++     +      F   VT Q     ++G         AK LKVAINGFGRIGRNFLRCWHGRKDSPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V  + ISVDGK+IKVVS+R+P  LPW ELGID+VIEGTGVFVD  GAG
Sbjct:   21 SEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAG 178          
BLAST of FC875379 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.333e-45
Identity = 90/124 (72.58%), Postives = 103/124 (83.06%), Query Frame = 3
Query:  321 KVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 692
            K A   V V+ E   K++VAINGFGRIGRNFLRCWHGR+++ LDVV +NDSGGVK ASHLLKYDS LGTF ADVKIVD+  ISVDGK IK+VS+RDPLQLPW E+ ID+VIEGTGVF+D  GAG
Sbjct:   24 KAARAVVDVRAEK--KIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDKVGAG 145          
The following BLAST results are available for this feature:
BLAST of FC875379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
G3PB_PEA1.547e-8176.80Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH2.234e-8077.95Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL3.810e-8077.55Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC3.233e-7181.82Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_MAIZE1.726e-4863.52Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL5.554e-4763.06Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH5.554e-4761.54Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC7.253e-4762.03Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA2.756e-4662.03Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE2.333e-4572.58Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC31403C08EF CTVClemen1 Citrus clementina cDNA clone C31403C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875379 ID=FC875379; Name=FC875379; organism=Citrus clementina; type=EST; length=698bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAGCACA
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