FC875381

Overview
NameFC875381
Unique NameFC875381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875381_ssr86 microsatellite FC875381_ssr86:86..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15411 contig Ccv1_Contig15411:100..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875381 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.291e-75
Identity = 141/196 (71.94%), Postives = 154/196 (78.57%), Query Frame = 1
Query:  106 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 693
            M+MQS+FDRLLFFEHARK+AE  YA++PLDADNLTRWGGALLELSQFQ V +SK+MI DA SKLEEAL V+P +HD LWCLGNAHTSH FLTPD DEAK YF KAT  FQQA D +PSN+LY+KSLEV AKAPELHMEIH+HG  QQTM                      DLKYDIFGWVILAVGIVAWVGFAKS
Sbjct:    1 MEMQSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTM---AAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKS 193          
BLAST of FC875381 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.969e-57
Identity = 106/196 (54.08%), Postives = 136/196 (69.39%), Query Frame = 1
Query:  106 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 693
            MD +++FDR+L FE  R+ AE  Y  +PLDADNLTRWGG LLELSQF ++ D+K+MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE+P N  Y KSLE+ AKAP+LH E +K GLG Q M                      D KYD  GWVILA+G+VAW+ FAK+
Sbjct:    1 MDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPM--GRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFAKA 194          
BLAST of FC875381 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.053e-56
Identity = 103/198 (52.02%), Postives = 137/198 (69.19%), Query Frame = 1
Query:  118 SDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTM-----XXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKSI 696
            +DF+RL+ FEHARK +EA Y  DPLD++NL +WGGALLELSQFQ +P++K M+ DAISKLEEAL ++P +H  LWC+ NA+T+HAF   D +EAKE+F+KAT YFQ+A +E+P N+ Y+KSL+ + KAPELHM+    G+GQQ +                           +  YD+ GW+ILA GIVAWVG AKS+
Sbjct:    6 ADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKSL 203          
BLAST of FC875381 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.429e-50
Identity = 101/196 (51.53%), Postives = 128/196 (65.31%), Query Frame = 1
Query:  106 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 693
            M   SD +R+ FF+ A + A+  Y ++P DADNLTRWGGALLELSQ +  P+S K + DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+    Q +                       D  YD+FGWV+L VG+V WVG AKS
Sbjct:    3 MGAMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQ----AASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKS 194          
BLAST of FC875381 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.429e-50
Identity = 101/196 (51.53%), Postives = 128/196 (65.31%), Query Frame = 1
Query:  106 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 693
            M   SD +R+ FF+ A + A+  Y ++P DADNLTRWGGALLELSQ +  P+S K + DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+    Q +                       D  YD+FGWV+L VG+V WVG AKS
Sbjct:    3 MGAMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQ-----AASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKS 193          
BLAST of FC875381 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.429e-50
Identity = 103/196 (52.55%), Postives = 129/196 (65.82%), Query Frame = 1
Query:  106 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 693
            MDMQ++ +RL+ FEHARK AEA Y K+PLDA+NLTRW GALLELSQFQT P  K+MIL+AI KL EAL++ P +HD LW +GNAH S  FL+ DQ EA + F KA+ +FQ AV+E+P +ELY+KSL +A+KAPELH                                   + KYD+FGWVILA  +VAW+ FA S
Sbjct:    1 MDMQNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQTEP--KQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHT--------------GGTAGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANS 180          
BLAST of FC875381 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.846e-45
Identity = 97/193 (50.26%), Postives = 123/193 (63.73%), Query Frame = 1
Query:  127 DRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGL-----GQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAK 690
            D+L FFE  RK AE  Y  +P DADNL RWG ALLELSQFQ V DS KMI DAISKLE+A+++ P +HD +WCLGNA+TS+A LTPD  +A+  F  A L+F  AV ++P N++Y KSLE+A KAP+LH   HK+ L     G +T+                      D KY + GWVILA+G+VA + F K
Sbjct:    2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETL--------AIPSPKVVKNKKSSDEKYIVMGWVILAIGVVACISFRK 186          
The following BLAST results are available for this feature:
BLAST of FC875381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU8.291e-7571.94Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO203_ARATH5.969e-5754.08Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TO202_ARATH5.053e-5652.02Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TOM20_ORYSJ2.429e-5051.53Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSI2.429e-5051.53Probable mitochondrial import receptor subunit TOM... [more]
TO204_ARATH2.429e-5052.55Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TO201_ARATH6.846e-4550.26Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC31403C10EF CTVClemen1 Citrus clementina cDNA clone C31403C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875381 ID=FC875381; Name=FC875381; organism=Citrus clementina; type=EST; length=701bp
GAGGGTTTCAGCGAACTTTCAACACACACGCAGAGAGACTCTAGTCTCGT
TCATCTGTCAGTACAAAGCAATAAAGAGAGGGCGCGAGAGAGAGAGAGAC
ACGCCATGGACATGCAAAGCGACTTCGATAGATTGCTCTTCTTTGAACAC
GCTCGCAAAACCGCCGAAGCTGCCTACGCCAAGGACCCCCTCGATGCCGA
TAATTTAACGAGATGGGGCGGTGCTCTTCTGGAGTTGTCCCAGTTTCAAA
CTGTTCCAGATTCAAAGAAGATGATATTAGATGCAATTTCAAAGCTGGAG
GAGGCATTGATGGTTAGCCCCAACAGACACGACACATTGTGGTGTTTGGG
AAATGCTCATACTTCTCATGCTTTTTTGACTCCTGACCAGGATGAGGCCA
AGGAGTATTTCAATAAGGCAACTCTGTACTTTCAGCAAGCAGTTGATGAG
GAACCCTCGAATGAGCTTTATCAGAAGTCTTTAGAGGTGGCTGCAAAGGC
TCCGGAGTTGCACATGGAAATCCACAAGCATGGTTTAGGTCAACAAACAA
TGGGGCCATCTACTGGACCTTCTTCTACTTCTTCGGGTGCAAAGACTTCA
AAGAAGAAGAAAAGCAGTGATCTCAAATACGACATATTTGGATGGGTAAT
CCTGGCTGTCGGCATTGTTGCATGGGTTGGATTTGCAAAATCCATATGCC
T
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