FC875382

Overview
NameFC875382
Unique NameFC875382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:7..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.430e-50
Identity = 94/167 (56.29%), Postives = 113/167 (67.66%), Query Frame = 2
Query:  170 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +P   GK YYGRGP+QL+WNYNY +C                 + DPV++FK+AIWFWMT Q P
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC--GRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSP 233          

HSP 2 Score: 24.6386 bits (52), Expect = 9.430e-50
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH VI  +W
Sbjct:  234 KPSCHAVIVGQW 245          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.608e-49
Identity = 93/163 (57.06%), Postives = 112/163 (68.71%), Query Frame = 2
Query:  182 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC  +  YP   GK YYGRGP+QL+WNYNY  C                 ATD VLSFK+A+WFWMT Q P
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC--GEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAP 164          

HSP 2 Score: 27.335 bits (59), Expect = 1.608e-49
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  652 ATKPSCHEVITDEW 693
            A KPSCH+V+T  W
Sbjct:  163 APKPSCHDVLTGRW 176          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.150e-49
Identity = 106/217 (48.85%), Postives = 130/217 (59.91%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYP--RRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH--------------ATKSLPTNGTISN 706
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +P     +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ   PS H              A + LP  GT++N
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTN 269          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.720e-49
Identity = 91/167 (54.49%), Postives = 111/167 (66.47%), Query Frame = 2
Query:  170 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPRRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +P     +YYGRGP+QL+WNYNY  C                 A D V++FK+AIWFWMTAQPP
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLC--GRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPP 248          

HSP 2 Score: 24.6386 bits (52), Expect = 2.720e-49
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH VI  +W
Sbjct:  249 KPSCHAVIAGQW 260          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.723e-49
Identity = 94/186 (50.54%), Postives = 117/186 (62.90%), Query Frame = 2
Query:  116 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPRRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +P     KYYGRGPIQ+++NYNY +                  ATD V+SFK+A WFWMT Q P
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQA--GKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSP 227          

HSP 2 Score: 25.409 bits (54), Expect = 2.723e-49
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH VIT  W
Sbjct:  228 KPSCHNVITGGW 239          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.256e-49
Identity = 107/222 (48.20%), Postives = 131/222 (59.01%), Query Frame = 2
Query:  116 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYP--RRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH--------------ATKSLPTNGTISN 706
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +P     +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ   PS H              A + LP  GT++N
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTN 268          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.334e-48
Identity = 99/188 (52.66%), Postives = 118/188 (62.77%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN-----YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +      P R KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q P
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGR-KYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSP 237          

HSP 2 Score: 24.6386 bits (52), Expect = 1.334e-48
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VI   W
Sbjct:  238 KPSCHDVIIGRW 249          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.266e-48
Identity = 93/169 (55.03%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  167 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN-----YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +      P R KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q P
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGR-KYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSP 242          

HSP 2 Score: 24.6386 bits (52), Expect = 2.266e-48
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VI   W
Sbjct:  243 KPSCHDVIIGRW 254          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 5.296e-48
Identity = 100/193 (51.81%), Postives = 115/193 (59.59%), Query Frame = 2
Query:  137 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC----NLNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPSHHATKSLPTNGTIS 703
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HETTGGW DAP G YAWGYC++ EI+   PYC    N       +Y GRGPIQL+WNYNY  C                  TDPV+SFK+AIWFWM  Q P       +  N T S
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC--GDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPS 265          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.527e-48
Identity = 98/181 (54.14%), Postives = 119/181 (65.75%), Query Frame = 2
Query:  134 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYP-RRGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF AQT HETTG  GW  AP G Y WGYC+  E++ P+ YC  + NYP   GK Y+GRGP+QLTWNYNY +C                 ATDP +SFKSA WFWMT Q P
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQC--GRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSP 234          

HSP 2 Score: 24.6386 bits (52), Expect = 8.527e-48
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  658 KPSCHEVITDEWN 696
            KPSCH+VI   W+
Sbjct:  235 KPSCHDVIIGAWS 247          
The following BLAST results are available for this feature:
BLAST of FC875382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_BRANA9.430e-5056.29Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_CARPA1.608e-4957.06Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIT_PHAVU2.150e-4948.85Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_ARATH2.720e-4954.49Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIB_VITVI2.723e-4950.54Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI5_PHAVU6.256e-4948.20Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_TOBAC1.334e-4852.66Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC2.266e-4855.03Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI6_POPTR5.296e-4851.81Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_THECC8.527e-4854.14Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC31403C11EF CTVClemen1 Citrus clementina cDNA clone C31403C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875382 ID=FC875382; Name=FC875382; organism=Citrus clementina; type=EST; length=722bp
GACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGA
GGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
CGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCC
GTCCCCCTACTGTAATCTTAACTATCCACGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAA
GACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCAC
AGCCACCAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAACCATC
AGCAATGACGTAACGCCGGCCG
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