FC875389

Overview
NameFC875389
Unique NameFC875389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3995 contig Ccv1_Contig3995:58..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.462e-78
Identity = 133/195 (68.21%), Postives = 164/195 (84.10%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMDISAYNKKR 681
            FL+KTY+MVDDSSTD+IVSWS N NSF+VWN  EF+RLLLPTYFKHNNFSSFIRQLNTYGFRKIDPE+WEF NDDF+KD++HLLKNIHRRKPIHSHSHP    SS D ERA  +EQM++LS EK+A+EA +++ KQQ+  AK Q E++ + +D M+ RQ+ LL FL+ A++NPTFV +  +K+E +DISAYNKKR
Sbjct:   24 FLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHP--PASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTFVKNFGKKVEQLDISAYNKKR 216          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.658e-65
Identity = 123/198 (62.12%), Postives = 155/198 (78.28%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKN-SFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMDI--SAYNKKR 681
            FL+KTY+MVDD STD +VSWSD  + SFVVWN PEFA  LLP YFKH+NFSSFIRQLNTYGFRKIDPE+WEF+N+ F+K ++HLLKNIHRRKPIHSHSHP   G+  D ERA FE+++ERLS EKS L+A++ + KQQ+S    Q+EDL +R+  M+QRQ  ++ FLQ+A +NP FV+ L +  E+  I   A+NKKR
Sbjct:   22 FLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHSHP--PGALPDNERAIFEDEIERLSREKSNLQADLWKSKQQQSGTMNQIEDLERRVLGMEQRQTKMIAFLQQASKNPQFVNKLVKMAEASSIFTDAFNKKR 217          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.054e-55
Identity = 104/215 (48.37%), Postives = 146/215 (67.91%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQ------------------GSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMD--ISAYNKKR 681
            FL+KTYDMVDD STD+IVSWS   NSFVVW+PPEFA+ LLP YFKHNNFSSF+RQLNTYGFRK+DP++WEF+N+ F++ ++HLLK+I RRKP H H+  Q Q                  G+ V+  +   EE++ERL  +K+ L   +VRL+QQ+ +   QL+ + QR+  M+ RQ+ +++FL KAV +P F+    ++    +  I+  +KKR
Sbjct:   42 FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQMMSFLAKAVNSPGFLAQFVQQQNESNKRIAEGSKKR 256          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.544e-54
Identity = 104/215 (48.37%), Postives = 144/215 (66.98%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQ------------------GSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMD--ISAYNKKR 681
            FL+KTYDMVDD STD+IVSWS   NSFVVW+PPEFA+ LLP YFKHNNFSSF+RQLNTYGFRK+DP++WEF+N+ F++ ++HLLK+I RRKP H H+  Q Q                  G+ V+  +   EE++ERL  +K+ L   +VRL+QQ+     QL+ + QR+  M+ RQ+ +++FL KAV  P F+    ++    +  I+  +KKR
Sbjct:   40 FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQMMSFLAKAVNRPGFLAQFVQQQNESNKRIAEGSKKR 254          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.017e-54
Identity = 96/176 (54.55%), Postives = 131/176 (74.43%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGS---SVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNP 615
            FL KTY+MVDDSS+D IVSWS +  SF+VWNPPEF+R LLP +FKHNNFSSFIRQLNTYGFRK DPE+WEF+NDDFV+ + HL+KNIHRRKP+HSHS P  Q       D ER     Q+ERL+ EK  L   + +  ++R   ++Q+++L +R+  M++RQ+ +++F+ + ++ P
Sbjct:   16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTMVSFVSQVLEKP 191          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.440e-54
Identity = 104/213 (48.83%), Postives = 147/213 (69.01%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSH----SHPQTQ------------GSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK--IESMDISAYNKKR 681
            FL KTYDMV+D +TD IVSWS   NSF+VW+PPEF+R LLP YFKHNNFSSF+RQLNTYGFRK+DP++WEF+N+ F++ ++HLLK I RRK +  H    S+PQ+Q             S V+  +   EE++E+L  +K+ L   +V+L+QQ+ T   +L+ L + +  M+QRQ+ +++FL KAVQNPTF+    +K    +M ++  NKKR
Sbjct:   53 FLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKR 265          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.001e-53
Identity = 102/205 (49.76%), Postives = 147/205 (71.71%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIH-SHSHPQTQ------GSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIE---SMDISAYNKKR 681
            FL KTYDMVDD  T+E+VSWS   NSFVVW+ PEF+++LLP YFKHNNFSSF+RQLNTYGFRK+DP++WEF+N+ F++ ++ LLK+I RRKP H   +  QTQ      G+ V+  +   EE++ERL  +K+ L   +VRL+QQ+   + QL+++ Q++  M+QRQ+ +++FL KAVQ+P F++ L ++     +  I   NKKR
Sbjct:   28 FLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKR 232          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.913e-53
Identity = 106/211 (50.24%), Postives = 142/211 (67.30%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIH---------SHSHPQTQGSSVDPERATF--EEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMD-----ISAYNKKR 681
            FL KTYDMVDD +TD IVSWS N NSF+VW PPEFAR LLP  FKHNNFSSF+RQLNTYGFRK+DP++WEF+N+ F++ ++HLL++I RRKP H          HS+ Q    S   E   F  EE++ERL  +K+ L   +VRL+QQ+ +   QL+ + QR+  M+ RQ+ L++FL KAVQ+P F+    ++    +     IS  +KKR
Sbjct:   38 FLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKR 248          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.488e-53
Identity = 100/203 (49.26%), Postives = 144/203 (70.94%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKP--IHSHSHPQTQ----GSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIE--SMDISAYNKKR 681
            FL KTYDMVDD  TD++VSWS   NSFVVWN PEFA+  LP YFKHNNFSSF+RQLNTYGFRK+DP++WEF+N+ F++ ++ +LK+I RRKP  +     PQ Q    G+ V+  +   EE++ERL  +K+ L   +VRL+QQ+   +  L+++ Q++  M+QRQ+ +++FL KAVQ+P F++  +++    +  IS  NKKR
Sbjct:   24 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKR 226          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.445e-52
Identity = 101/204 (49.51%), Postives = 140/204 (68.63%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERAT-------FEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIES--MDISAYNKKR 681
            FL+KTY+MVDD +TD +VSW    NSFVVWN PEFAR LLP YFKH+NFSSF+RQLNTYGFRK+DP++WEF+N+ F++ ++HLLK I+RRKP H ++  Q       P  A         EE++E L  +K+ L   +VRL+QQ+ T   QL+ L +R+  M+QRQ+ +++FL KA+ +P F+    ++ E+    I A NKKR
Sbjct:   38 FLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKR 241          
The following BLAST results are available for this feature:
BLAST of FC875389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSFA5_ARATH4.462e-7868.21Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HSFA5_ORYSJ5.658e-6562.12Heat stress transcription factor A-5 OS=Oryza sati... [more]
HSF8_SOLPE9.054e-5548.37Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC1.544e-5448.37Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA4A_ARATH2.017e-5454.55Heat stress transcription factor A-4a OS=Arabidops... [more]
HFA1A_ARATH3.440e-5448.83Heat stress transcription factor A-1a OS=Arabidops... [more]
HFA1B_ARATH1.001e-5349.76Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA1D_ARATH2.913e-5350.24Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA1E_ARATH6.488e-5349.26Heat stress transcription factor A-1e OS=Arabidops... [more]
HSFA1_ORYSJ1.445e-5249.51Heat stress transcription factor A-1 OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403D06EF CTVClemen1 Citrus clementina cDNA clone C31403D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875389 ID=FC875389; Name=FC875389; organism=Citrus clementina; type=EST; length=682bp
GGTCTCTCGGACGCCAATTGACCCGAAAAATCAACGAGAATGGAGACATC
GGCGGCGTCAGGTGGCCCCGGCGGACTAGGAGGAGGGCCGGCGCCGTTTC
TTATAAAGACTTACGACATGGTTGACGATTCATCAACGGACGAGATCGTG
TCTTGGAGCGACAACAAAAACAGTTTTGTTGTTTGGAACCCACCTGAATT
CGCTCGTCTTCTGCTTCCAACTTATTTCAAGCATAACAATTTCTCTAGCT
TCATTCGACAGCTCAATACCTATGGATTCCGAAAAATTGATCCTGAGAAG
TGGGAATTTTCAAATGATGATTTTGTCAAGGATAAAAGGCATCTTCTTAA
GAATATCCACCGCAGGAAACCTATTCACAGCCACAGTCACCCTCAGACTC
AGGGTTCATCAGTGGATCCTGAGAGAGCAACATTTGAGGAACAAATGGAG
AGGCTTTCACATGAGAAATCTGCACTGGAGGCAAATATTGTAAGATTAAA
ACAGCAGCGGTCAACTGCAAAGCTTCAGTTAGAAGACCTTGCACAGCGAA
TTGATAGTATGGATCAGAGGCAGGAGAATTTGTTGACCTTCTTGCAAAAG
GCTGTTCAGAATCCTACTTTTGTTGATCATCTTGCCCGAAAAATTGAGTC
TATGGATATCTCAGCATACAATAAGAAACGAC
back to top