FC875405

Overview
NameFC875405
Unique NameFC875405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.891e-37
Identity = 73/192 (38.02%), Postives = 113/192 (58.85%), Query Frame = 3
Query:  159 DGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFST 734
            DGSVD+ G P ++ K+G W A   IL N+    LA++G+  NL+ +LT  L Q N  AA NV+ W GT Y+  L+GA L+D+YWGR+ T A F                    +P  C  +  P  T +  +  +F+  +Y +ALG GG +P +++FGADQ+D+ D++E   K +FF++FY ++N+G+L S+
Sbjct:   27 DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPA--QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSS 216          
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.094e-35
Identity = 77/193 (39.90%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  153 TLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFS 731
            T DG+VD +  PA + K+G W A   IL N+    LA++G+G NLV +L   L Q NA AANNV+ W+GT YI  L+GAF++D+Y GR+ T A F                    +P  C  +   C  +SS +  +F++++Y +ALG GG +P +++FGADQ+DE D  E   K +FF++FY ++N+G+L +
Sbjct:    8 TQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD--TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIA 197          
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 67/188 (35.64%), Postives = 106/188 (56.38%), Query Frame = 3
Query:  171 DYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCG-NELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFS 731
            D+ GRPA R+K+GGW +  +IL  + +  L   G+GVNLV +LT  +   NA AAN V+ + GT ++  L+G F++D++ GR+ T AIF                    RP  C     + C   S +++ + YL++Y  ALG GG + +++ FG+DQ+DE + KE      FF+ F+  +N+GSL +
Sbjct:   17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLA 204          
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.866e-30
Identity = 66/201 (32.84%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  132 KDDGEERTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFST 734
            +DD +  T DG++D + +PA + K+G W A   IL  +    LA++G+  NL+ +L + +   N  A+ +VS W+GT Y   L+GAF++D+Y GR+ T A F                     P  C  E       ++ +  + ++++Y +ALG GG +P +++FGADQ+D+ D KE  SK +FF++FY  +N+G++ ++
Sbjct:    2 EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CSGETCHA---TAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIAS 198          
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 60/199 (30.15%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  141 GEERTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGN-ELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFST 734
            G++ T DG+VD  G    R+++G W A   +++ +    +A++G+  NLV+++T  L Q   +++NNV+ W GT ++  ++GA+++D+++GR+ T  I                     +P  C    +  C   S +++ +F+ ++Y +A+G GG +PNI+T GADQ+DE D K+   K +FF+++  ++  G+ F+T
Sbjct:    7 GDDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFAT 205          
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 61/198 (30.81%), Postives = 110/198 (55.56%), Query Frame = 3
Query:  141 GEERTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCG-NELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFS 731
            G++ T DG+VD  G P  R+  G W A   +++ +    +A++G+  NL +++T  L Q   +++NNV+ W GT ++  ++GA++ D+  GR+ T  I                     +P  C    +  C   S L++ +F+ ++Y +A+G GG +PNI+T GADQ+D  D KE   K++FF+++  ++  G+LF+
Sbjct:    7 GDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFA 204          
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 47/168 (27.98%), Postives = 81/168 (48.21%), Query Frame = 3
Query:  207 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGNEL--TPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYD-EEDAKEGHSKVAFFSYFY 701
            GG +    I+ N+    +A +G+  N++++L R  +   A+  N +  W+       L+GAFLSDSY GRF T +I                     +P  C      + CG+ ++ ++ L Y +   +++G+GG +P    FGADQ D +E+ K      +FF ++Y
Sbjct:   23 GGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYY 190          
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: S15A1_HUMAN (Solute carrier family 15 member 1 OS=Homo sapiens GN=SLC15A1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 48/173 (27.75%), Postives = 82/173 (47.40%), Query Frame = 3
Query:  231 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGNELTPC---GTHSSL--EICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFST 734
            I++N+     +++G+   L+L+ T  +  ++  +      +    Y+  ++GA ++DS+ G+FKT                              N+LT     GT  SL   + L  + +  +ALG GG +P ++ FG DQ++E   K+   +  FFS FYLA+N GSL ST
Sbjct:   19 IVVNEFCERFSYYGMRAILILYFTNFISWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVTSVSSI----------NDLTDHNHDGTPDSLPVHVVLSLIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQ---RNRFFSIFYLAINAGSLLST 178          
BLAST of FC875405 vs. ExPASy Swiss-Prot
Match: S15A1_CANFA (Solute carrier family 15 member 1 OS=Canis familiaris GN=SLC15A1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 47/173 (27.17%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  231 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGNELTPC---GT--HSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFST 734
            I++N+     +++G+   L+L+  R +  ++  +      +    Y+  ++GA ++DS+ G+FKT                              N+LT     GT  + S+ + L  + +  +ALG GG +P ++ FG DQ++E   K+   +  FFS FYLA+N GSL ST
Sbjct:   19 IVVNEFCERFSYYGMRALLILYFRRFIGWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVTAVSSI----------NDLTDYNKDGTPDNLSVHVALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQ---RNRFFSIFYLAINAGSLIST 178          
The following BLAST results are available for this feature:
BLAST of FC875405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PTR2_ARATH9.891e-3738.02Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH1.094e-3539.90Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
CHL1_ARATH2.787e-3135.64Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR5_ARATH6.866e-3032.84Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH1.295e-2830.15Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR3A_ARATH1.096e-2730.81Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR2X_ARATH2.371e-1427.98Probable peptide transporter At1g52190 OS=Arabidop... [more]
S15A1_HUMAN6.456e-1227.75Solute carrier family 15 member 1 OS=Homo sapiens ... [more]
S15A1_CANFA1.438e-1127.17Solute carrier family 15 member 1 OS=Canis familia... [more]
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Properties
Property NameValue
Genbank descriptionC31403E11EF CTVClemen1 Citrus clementina cDNA clone C31403E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875405 ID=FC875405; Name=FC875405; organism=Citrus clementina; type=EST; length=743bp
GGTCATCACCAGCTTCTTGAAACCTTCTTGCTCTTTACCTGTTTAATAAT
CACCACCTTCCTCTTCTGCATATCACTCCAAAAAATTTCTCCCAAATGGA
CTGTCTAGAGATTTGTAAGGAGGAAAAGTTCAAGGACGATGGAGAAGAAC
GTACTCTAGATGGATCTGTTGATTACTATGGCCGCCCAGCAATCAGAGCA
AAATCTGGAGGATGGGTTGCTGGAATTATCATACTTTTGAACCAAGGTCT
TGCCACCTTAGCATTCTTTGGAGTTGGAGTGAACTTGGTGCTTTTCTTGA
CAAGGGTTTTGCAACAAAACAATGCTGAAGCTGCTAATAATGTAAGCAAA
TGGACTGGTACTGTCTACATCTTTTCGCTTGTTGGTGCTTTTCTCAGTGA
CTCCTACTGGGGACGATTCAAAACTTGTGCCATCTTTCAGGGAATATTTG
TCATCGGGCTGGTTTTGCTATCTCTATCATCATACCTTTTCTTGATCAGA
CCAAGAGGTTGCGGCAATGAACTAACTCCATGTGGAACACATTCAAGCTT
GGAGATTTGTCTATTTTACCTCTCTATCTACTTTGTTGCTCTGGGAAATG
GAGGATATCAGCCTAACATAGCTACATTTGGAGCTGATCAGTACGATGAA
GAGGACGCAAAAGAAGGACACTCCAAAGTGGCCTTCTTTAGCTACTTTTA
CTTGGCTTTGAACCTCGGTTCTCTCTTCTCCACACCATTTTGG
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