FC875483

Overview
NameFC875483
Unique NameFC875483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.230e-57
Identity = 113/197 (57.36%), Postives = 129/197 (65.48%), Query Frame = 1
Query:  103 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-----CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP--NYPC-RGKYY-GRGPIQLSWKLHYLRC 651
            GSA  CG      +CPGG CCS +GWCG T DYC  GCQS C+    G+     CD  D   GDG  G L  II +  F+ LL++RND RCPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYC+ +E+      YCDP  NY C  GK Y GRGPIQLSW  +Y  C
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINC--QPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC 214          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.494e-56
Identity = 104/187 (55.61%), Postives = 126/187 (67.38%), Query Frame = 1
Query:  103 GSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWKLHY 642
            GSA  CG    G VCPGG CCS+FGWCG T DYC  GCQS C+                 G++G++I+R MF D+L++RN+  CP + FYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYC+ RE G+  + YC P+  +PC    KYYGRGPIQ+S+  +Y
Sbjct:   18 GSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSST---------------GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPCAAGRKYYGRGPIQISYNYNY 188          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.036e-54
Identity = 109/194 (56.19%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  103 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCE--GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWKLHYLRC 651
            GSA  CG    G +CPGG CCS+FGWCG T DYC +  GCQS C+           G+ GD G L  +I+R+ F+ +L +RND  CPAR FYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYC+NRE+  A  DYC  DPNYPC  GK Y+GRGP+QL+W  +Y +C
Sbjct:   19 GSAEQCGRQAGGALCPGGLCCSQFGWCGNTDDYCKKENGCQSQCS-----------GSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPA--DYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQC 198          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 98/182 (53.85%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  112 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCR--GKYYGRGPIQLSWKLHYLRC 651
            G    G +CPGG CCS+FGWCG TTDYC  GCQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC    +YYGRGPIQ+SW  +Y +C
Sbjct:   31 GRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQCG-----------GPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC 201          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 111/193 (57.51%), Postives = 129/193 (66.84%), Query Frame = 1
Query:  103 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCC-EGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWKLHYLRC 651
            GSA  CG    G +CPGG CCS+FGWCG T DYC   GCQS C+           G A   G L  +ISR+ F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y+GRGP+QLSW  +Y +C
Sbjct:   20 GSAEQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC 201          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.715e-54
Identity = 97/182 (53.30%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  112 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCR--GKYYGRGPIQLSWKLHYLRC 651
            G    G +CPGG CCS+FGWCG TTDYC + CQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC    +YYGRGPIQ+SW  +Y +C
Sbjct:   30 GRQAGGALCPGGNCCSQFGWCGSTTDYCGKDCQSQCG-----------GPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC 200          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 1.145e-53
Identity = 102/190 (53.68%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  106 SAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCE-GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWKLHYLRC 651
            SA  CG    G +CP G CCS FGWCG T  YC + GCQS        +C P     G  G+L  IIS   F+D+L++RND  CPAR FYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYCF +E   A SDYC+P+  +PC    +YYGRGP+QLSW  +Y  C
Sbjct:   32 SAEQCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQS--------QCTPGGTPPGPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPA-SDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLC 212          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.552e-53
Identity = 106/190 (55.79%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  106 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWKLHYLRC 651
            SA  CGS   G  CP G CCS+FGWCG T DYC  G CQS C     G   P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    KY+GRGPIQ+S   +Y  C
Sbjct:   22 SAEQCGSQAGGARCPSGLCCSKFGWCGNTNDYCGPGNCQSQCP----GGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC 206          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.333e-53
Identity = 97/187 (51.87%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  106 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG--KYYGRGPIQLSWKLHYLRC 651
            SA  CG+   G +CPGG CCS+FGWCG T++YC +GCQS C+           G++G GG L  +IS   F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC    +YYGRGPIQ+SW  +Y +C
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC 193          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.333e-53
Identity = 102/185 (55.14%), Postives = 121/185 (65.41%), Query Frame = 1
Query:  112 GNCGSGVVCPGGECCSRFGWCGLTTDYCCE-GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWKLHYLRC 651
            G    G +CP G CCS FGWCG T  YC + GCQS C     G   P     G  G+L  IISR  F+D+L++RND  CPAR FYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYCF +E    SS+YC P+  +PC     YYGRGP+QLSW  +Y +C
Sbjct:   24 GRQAGGALCPNGLCCSEFGWCGDTEAYCKQPGCQSQC-----GGTPP-----GPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQN-PSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC 197          
The following BLAST results are available for this feature:
BLAST of FC875483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_POPTR2.230e-5757.36Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI5.494e-5655.61Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_THECC1.036e-5456.19Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU1.353e-5453.85Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI1_GOSHI3.937e-5457.51Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI5_PHAVU6.715e-5453.30Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIB_ARATH1.145e-5353.68Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_TOBAC2.552e-5355.79Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_PEA3.333e-5351.87Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_BRANA3.333e-5355.14Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404D11EF CTVClemen1 Citrus clementina cDNA clone C31404D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875483 ID=FC875483; Name=FC875483; organism=Citrus clementina; type=EST; length=735bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAG
GAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAG
TGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGA
AGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCG
ACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGG
AAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGC
CAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTC
CAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCT
GCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCG
CTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTAC
TATGGCCGAGGTCCAATTCAACTCTCTTGGAAATTACATTACTTACGGTG
CGGAGAAAGCCTAGGGCTAGGAGAGGAGTTGTTGAACATCCAGACCTTCT
TGCTACTGATCAGTACTATCATTCAGTCAGCATCT
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