FC875485

Overview
NameFC875485
Unique NameFC875485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875485_ssr21 microsatellite FC875485_ssr21:21..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14151 contig Ccv1_Contig14151:162..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875485 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.583e-35
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  346 SFSNNLLDDTVASLIERAQXXXXXXXXXXXXXXXXXXXXXXXYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGEYSVLYDHDLESYALYD 708
            SF +NL + T++ L+++ Q                        +ASFKV +LESRDR+GGRIHTDYSFGCPVDMGASWLHGV +ENPLAP+IRRLGLTLYRTSG+ S+LYDHDLESY L+D
Sbjct:    7 SFPDNLPEGTISELMQK-QNNVQPSVIVIGSGISGLAAARNLSEASFKVTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGVSDENPLAPIIRRLGLTLYRTSGDDSILYDHDLESYGLFD 126          
BLAST of FC875485 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 1
Query:  475 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGEYSVLYDHDLESYALYD 708
            DASF+V++LESRDR+GGR+HTDYSFG PVD+GASWLHGVC ENPLAP+I RLGL LYRTSG+ SVLYDHDLESYAL+D
Sbjct:   48 DASFQVMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLESYALFD 125          
BLAST of FC875485 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 1
Query:  475 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGEYSVLYDHDLESYALYD 708
            DASF+VV+LESRDR+GGR+HTDYSFG PVD+GASWLHGVC ENPLA +I RLGL LYRTSG+ SVLYDHDLESYAL+D
Sbjct:   49 DASFQVVVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAAVIGRLGLPLYRTSGDNSVLYDHDLESYALFD 126          
The following BLAST results are available for this feature:
BLAST of FC875485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PAO4_ARATH6.583e-3560.33Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
PAO2_ARATH6.161e-3382.05Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH2.341e-3282.05Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
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Properties
Property NameValue
Genbank descriptionC31404E01EF CTVClemen1 Citrus clementina cDNA clone C31404E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875485 ID=FC875485; Name=FC875485; organism=Citrus clementina; type=EST; length=709bp
GCTTCCGCTTCCTATCGCTCCTTCTTCTTCTTCTTGTTCGATTTAAATTA
TTTCAGTTTTTTTGAGAAAAAAACAATAACAGAAAAAGATTCACCATATG
ATCTGGTTTGGTGAGCTGCGTTATTCCTCCAATCTCAGCCGCTTCATTGC
TGGCCTTCTTATTTTCATTCTTTATCATTCTTTCCAATTAATTTCTAATT
TCTTGACTCCTATACACCCTTAATTATTTATTTTTATTTTATATTTTCTC
TTCCTTTTTTCGATACTATCAAATATCAATCGCATCTCGCTTTTCATTTT
CCGTTCTTCGTGCTCGATTCCCTCTCTATTATGGATTCTAACCAATCATT
CTCCAACAACTTGCTCGACGATACTGTAGCTTCGCTCATTGAGAGGGCGC
AAATCGGTTCACTGCCTTCTGTCATTGTGATTGGTGGTGGTATTTCGGGT
CTTGCCGCTGCACGGATCCTCTATGATGCTTCTTTTAAGGTGGTCTTACT
GGAATCGCGGGACAGACTTGGTGGTCGTATTCATACGGACTACTCATTTG
GTTGTCCAGTGGACATGGGAGCTTCATGGCTACATGGTGTATGCAATGAG
AATCCCTTGGCCCCACTGATACGTCGTCTGGGGCTTACATTGTACCGTAC
CAGTGGTGAATACTCTGTGTTGTATGACCATGATTTGGAGAGTTATGCAC
TCTATGATA
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