FC875491

Overview
NameFC875491
Unique NameFC875491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15027 contig Ccv1_Contig15027:18..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875491 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.372e-33
Identity = 64/149 (42.95%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  232 LSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFN 678
            L C +WR  VETNN+  W T+PE+CADYV  YM+G  Y+++ + V++EA  +A+S+ L  DG+D+W+FD+DET L NLPYY+ + +G++ ++   F++WV  G A                G K+  LTGR E  R+VT  NL +AGF+
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFH 189          
BLAST of FC875491 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.272e-32
Identity = 67/152 (44.08%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  226 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNT 681
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTEANLK AG++T
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHT 187          
BLAST of FC875491 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.272e-32
Identity = 67/152 (44.08%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  226 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNT 681
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTEANLK AG++T
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHT 184          
BLAST of FC875491 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 66/159 (41.51%), Postives = 97/159 (61.01%), Query Frame = 1
Query:  205 GSRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNT 681
            G R+++V    C S+RL VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V  +A  +A    +  +  DI++F ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KIVFL+GR  D+  VTEANLK AGF+T
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHT 188          
BLAST of FC875491 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  235 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTG-KAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAG 672
            +C SW LGVET+N+I + TVP  C DYV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +  +P  +  W+ TG                   GI+ + L+ R +  +NVT  NL+ AG
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAG 198          
BLAST of FC875491 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 53/148 (35.81%), Postives = 83/148 (56.08%), Query Frame = 1
Query:  235 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKA-XXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAG 672
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +   P  +  W+ +G++                 GI+ + ++ R +    VT  NLK  G
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVG 203          
The following BLAST results are available for this feature:
BLAST of FC875491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC4.372e-3342.95Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN1.272e-3244.08Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN1.272e-3244.08Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN8.533e-2941.51Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP2_ARATH8.265e-2438.51Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH1.010e-2135.81Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC31404E07EF CTVClemen1 Citrus clementina cDNA clone C31404E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875491 ID=FC875491; Name=FC875491; organism=Citrus clementina; type=EST; length=683bp
GTGAGGAAAAACAATATTACAGTTGTAATGAGCATGGGAGGGGTGTCACT
GCCATTATTTTTCTTTTTTCTGGCTACCATATCAGCAACATCCCATGGAT
TTAGCATGGACATCCGCCATCTTTTTCTGGCTACCATACCAGCAACATCC
CATGGATTTAGCATGGACATCCCCCATCAGATTCATCTTCTCCGACCGAA
AGCCGGTTCCCGGAACAACGATGTGCCCGGCTTGTCCTGCCTGAGTTGGC
GACTCGGAGTGGAAACTAATAACGTTATAGGATGGGCGACTGTTCCCGAA
AAATGTGCAGACTACGTGGGGCATTACATGTTAGGCCAGCAGTACCGCCT
GGACTCTGAAGTGGTTGCTAATGAGGCCATTCTCCATGCTCAGAGCCTCA
CGCTTGCTGGCGACGGCAAGGACATTTGGGTTTTCGACATAGATGAAACC
TCGCTATGTAATTTGCCATATTATGCTAAGAATGGATTCGGGGTGAAGCC
GTACAACCCTACTATGTTTAATGAATGGGTTAACACCGGAAAAGCACCAC
CGCTGCCAGAGAGCCTTAAGCTTTACAAAAAATTATTATTGCTTGGAATT
AAGATTGTATTCCTCACGGGAAGACCAGAAGATCAGAGAAATGTTACAGA
AGCTAATTTAAAGCATGCTGGATTCAACACTTG
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