FC875500

Overview
NameFC875500
Unique NameFC875500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10241 contig Ccv1_Contig10241:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.462e-63
Identity = 117/187 (62.57%), Postives = 145/187 (77.54%), Query Frame = 2
Query:  107 MTSASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 667
            M S++PPVLPISN                    TPAFR  IN I+++++ G ++RRPWAELADRSA SKPES S+A +RIRKNYSYF+VNYLTV   ++ FSL+T+PFSL+ L+ LLASW+FLYLFRP+DQP+V+FGRTFS+RETLG LI+ SIFV FLT VGS+L+SA+M+G  LICAHGAFR PE
Sbjct:    1 MASSAPPVLPISNPQTVPSAAPSSVESQPPIA-TPAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPE 186          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.835e-56
Identity = 106/184 (57.61%), Postives = 138/184 (75.00%), Query Frame = 2
Query:  116 ASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 667
            A+PP LPIS+                    TPAFR  ++ +S S+R   +QRRPW EL DRSA S+PES ++A  RIR+N  YF+VNY+T+V++V+A SL+++PFSLL+L+ L  +WIFLYLFRPSDQPLVV GRTFS+RETLGVL++L+I V FLTSVGS+L SA+M+G G++C HGAFRVPE
Sbjct:    3 ANPPTLPISDHSGGGSQSQQPVS-------TPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPE 179          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.143e-53
Identity = 99/184 (53.80%), Postives = 134/184 (72.83%), Query Frame = 2
Query:  116 ASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 667
            A+PP LP++N                    TPAFR   + +S S+R G +QRRPW EL DRS+ ++PES ++A  RIRKN +YF+VNY+ +V++V+AFSL ++P SLL+L+GLL  W+FLYLFRPSDQPLVVFGRTFS+RETL  L++ +I V F+TSVGS+L SA+M+G  ++C HGAF VP+
Sbjct:    2 ATPPTLPVTNQQAVQSQPPIN---------TPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPD 176          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.724e-51
Identity = 100/187 (53.48%), Postives = 133/187 (71.12%), Query Frame = 2
Query:  107 MTSASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 667
            M S +PPVLPIS                      P  RA +N +++++  G ++ RPW+EL DRSAF+KP+S SEA  R RKN SYFRVNY+ +VA+++ FSL+ +PFSL++L+ L ASW+FLYLFRPSD+PL++FGR+FSE ETLG LI+ +I V F TSVGS+LISA+M+G   IC HGAFR P+
Sbjct:    1 MVSTNPPVLPISTTATDTTNQPPIVTAVVESQP-PVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPD 186          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.595e-49
Identity = 94/185 (50.81%), Postives = 135/185 (72.97%), Query Frame = 2
Query:  113 SASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 667
            S+SP +LP++N                    + AFR  ++ +S SLR   +QRRPW EL DRS+F++P+S +++  RIRKN +YF+VNY  +V++V+AFSL+++PFSLL+L+ LL SW+FLYLFR SDQPLV+FGR+FS+RETL  L++ +I V F+TSVGS+L SA+ +G  ++C HGAFRVP+
Sbjct:    2 SSSPAILPVTNQQAATQSQPPIN--------SHAFRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPD 178          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.279e-46
Identity = 86/152 (56.58%), Postives = 118/152 (77.63%), Query Frame = 2
Query:  212 AFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 667
            + R L++ +  ++R+  A  RPWAEL DRSAFS+P S SEAT R+RKN+SYFR NY+T+VA+++A SL+T+PF+L +L  L ASW+FLY FRP+DQPLV+ GRTFS+ ETLG+L + ++ V F+TSVGS+L+S + VG   +  HGAFR PE
Sbjct:   25 SLRVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPE 176          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1F1_ARATH (PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 2
Query:  209 PAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 667
            P    +   I+   R G A RRPW ++ D  +F+ P   +    RIR N  YF+ NY  VV   +  SLI NPFSLL+L+ LL +W+FLY  R  D+PL VF R    R  L ++ V+++ + FLT     +  A++ GA  + +H A R  E
Sbjct:   16 PKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLR--DEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTE 166          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  227 INHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFR 658
            I+     ++ G A RRPW  + D  + + P  F +A  RI+ N  YFR NY   V  ++  SL+ +P SL++L  L+  WIFLY  R  D+PLVVFG    +R  L  L VL++ +  LT   S ++ +++  A L+  H A R
Sbjct:   22 ISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVR 163          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  248 LRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 667
            ++ G A RR W  + D  +   P   S+A  RI+ N +YFR+NY  VV +VI FSLI +P SL++   L+  WIFLY  R  D+P+ +F     +R  L VL VL++ +  LT+    ++ A++ GA L+  H   R  E
Sbjct:   29 IKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTE 166          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 42/129 (32.56%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  272 RPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFR 658
            RPW E+ D SA S P  + EA   ++ N SYFR NY   V  ++   LI +P S++  + +   WI LY  R ++  +V+ G+   ++  L +L ++++     T VG  ++ ++++G  ++ AHGAFR
Sbjct:   48 RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFR 176          
The following BLAST results are available for this feature:
BLAST of FC875500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PR1B4_ARATH7.462e-6362.57PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B3_ARATH8.835e-5657.61PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH9.143e-5353.80PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH1.724e-5153.48PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH3.595e-4950.81PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH1.279e-4656.58PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
PR1F1_ARATH1.987e-2337.91PRA1 family protein F1 OS=Arabidopsis thaliana GN=... [more]
PR1F2_ARATH4.580e-2036.81PRA1 family protein F2 OS=Arabidopsis thaliana GN=... [more]
PR1F3_ARATH7.812e-2037.86PRA1 family protein F3 OS=Arabidopsis thaliana GN=... [more]
PRA1E_ARATH1.128e-1832.56PRA1 family protein E OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC31404F04EF CTVClemen1 Citrus clementina cDNA clone C31404F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875500 ID=FC875500; Name=FC875500; organism=Citrus clementina; type=EST; length=709bp
GATAATCTATATTCGCTCCTCTTCATCCCACCCTGCCTCAATATCTTTCA
ATTCATTAGCCACCAAAGAACGATAAGAAAAAGGTAACAATAATAAAATT
CCCAAAATGACCTCCGCATCGCCGCCAGTCCTCCCAATCTCCAACTCCCA
ACCGACCACCACGGCGTCCTCCGCTTCCTCGGTCCAATCCCAACCACCAG
TGACGACCCCGGCTTTCCGCGCCCTAATCAACCACATCTCCGACTCACTC
CGTTACGGCTTCGCCCAGCGCCGCCCGTGGGCCGAACTCGCCGACCGATC
CGCCTTCTCCAAACCGGAGTCGTTCTCCGAAGCCACCCTCCGCATCCGCA
AGAACTACTCCTATTTCCGAGTCAATTACCTCACGGTCGTCGCTGTCGTC
ATTGCTTTCTCTCTCATCACCAATCCTTTCTCTCTCCTCATGCTCGTCGG
ACTCCTCGCCTCCTGGATCTTCCTCTACCTCTTCCGCCCCTCCGATCAGC
CGCTCGTTGTATTCGGCCGCACGTTCAGCGAGCGCGAGACGCTTGGTGTC
TTGATCGTTTTGAGCATCTTCGTCTTTTTCCTCACCAGTGTCGGATCGAT
CTTGATCTCGGCTGTGATGGTGGGGGCTGGTCTGATTTGTGCTCACGGTG
CGTTTAGGGTTCCTGAGATCTGTTCTTGGACGAACAGAGCCTTCTGCACA
CGGATCTTG
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