FC875505

Overview
NameFC875505
Unique NameFC875505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2412 contig Ccv1_Contig2412:1..381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.788e-28
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            DEK G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct:   81 DEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLK 157          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.788e-28
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            DEK G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct:   80 DEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLK 156          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.868e-26
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKHT 240
            D+++G I D  FKTFGCGSAIASSS  TE VKGK +EE + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +K +
Sbjct:   82 DDETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRS 161          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.358e-26
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            I DA FKTFGCGSAIASSS+ TEW+KGK +E+   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ K
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQK 124          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.085e-25
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            + G I DACFKT+GCGSAIASSS+ TEWVKGK +EE  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRK 124          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_BUCBP (NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nifU PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKH 237
            K+G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct:   49 KNGIIQDACFKTYGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYKNKN 125          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU2_YEAST (Iron sulfur cluster assembly protein 2, mitochondrial OS=Saccharomyces cerevisiae GN=ISU2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.156e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            ++KSG I +  FKTFGCGSAIASSS  TE V+G  ++E + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY+ K
Sbjct:   72 NDKSGIIENVKFKTFGCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKTK 149          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            ++++G I +  FKTFGCGSAIASSS  TE V+GK +E+   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AK
Sbjct:   96 NDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAK 173          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.030e-25
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            + G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSK 124          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 124          
The following BLAST results are available for this feature:
BLAST of FC875505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_MOUSE1.788e-2880.77Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN1.788e-2880.77Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISU1_DEBHA4.868e-2672.50Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_RICPR6.358e-2676.39NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAI1.085e-2571.05NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
NIFU_BUCBP1.850e-2568.83NifU-like protein OS=Buchnera aphidicola subsp. Ba... [more]
ISU2_YEAST3.156e-2571.79Iron sulfur cluster assembly protein 2, mitochondr... [more]
ISU1_KLULA4.121e-2570.51Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_BUCAP7.030e-2567.11NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
NIFU_SHIFL1.199e-2470.27NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31404F09EF CTVClemen1 Citrus clementina cDNA clone C31404F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875505 ID=FC875505; Name=FC875505; organism=Citrus clementina; type=EST; length=381bp
GATGAAAAGAGTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGTTG
TGGCTCTGCCATCGCTTCATCATCTGTTGCCACAGAATGGGTGAAAGGGA
AGCAGATGGAGGAAGTTTTGTCCATTAAGAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCGGTTAAGCTGCATTGTAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACATACCAAATCAAGTG
CCGCCTCAGAGGCAGCTCCTGCAGAGAAGGCTGCCGATGCTTGAAGATAT
TGATGAAAACATTTGAAAAATGATGTTAATGTGCTACTTGTGGAAGGTGT
ATCAGGGACACTGCAAATCCTAATATTGATG
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