FC875514

Overview
NameFC875514
Unique NameFC875514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875514_ssr318 microsatellite FC875514_ssr318:318..327. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10246 contig Ccv1_Contig10246:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.672e-59
Identity = 119/193 (61.66%), Postives = 143/193 (74.09%), Query Frame = 2
Query:   98 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQAXXXXXXXXXXXXXXXXXXXXFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARGS 676
            ++NL NPE  S EEQNPLA   S  P A+LSL+     + P++T F++     LF+H PNKVK+PTQA                    FKST++ANPLQSPLS+ P RP+DP++ AA+RRA++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIESVS+LRKNL ARGS
Sbjct:    7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPNKVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRRAAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGS 188          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 41/71 (57.75%), Postives = 58/71 (81.69%), Query Frame = 2
Query:  464 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARGS 676
            +VW+RNDLRVHD+E L +A +++  V+ +YCFDPR +GK+  GF+KTGP+RA FL+ESV+DLR++L   GS
Sbjct:    7 LVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESVADLRRSLRQLGS 77          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  464 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARGS 676
            +VWFRNDLR+HD+E L+ A    +++  VYC+DPR + ++  GF KTGP+R++FL +SV +L ++L   G+
Sbjct:    9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGN 79          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  461 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLXARG 673
            +IVWFRNDLRV DNE+L  A   S ++LPVYC DPR +G +   G  KTG  RA F+IE ++DL++NL  RG
Sbjct:   80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRG 151          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.833e-14
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  455 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLXARGS 676
            R  I   RNDLR+HDNE L+ A+  +  ++P+YCFDPR Y G     F KTGP+R  FL+ESV DLR  L  +GS
Sbjct:    6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDLRITLKKKGS 80          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 2
Query:  461 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLIESVSDLRKNLXARG 673
            +IVWFRNDLRV DNE++  A   S +VLPVYC DPR    S+   GF KTG  RA FLIE + DL++NL  +G
Sbjct:   86 AIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLEDLKRNLTKQG 158          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  455 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLXARGS 676
            R  I   RNDLR+HDNE  + A   +  ++P+YCFDPR Y G     F KTGP+R  FL++SV DLR  L   GS
Sbjct:    5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGS 79          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  461 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLXARG 673
            +I+WFRNDLRV DN++L  A + S ++LPVYC DPR +  +    F KTG  R  FL+E + DLRKNL  RG
Sbjct:   86 TILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRG 157          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  461 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARG 673
            ++VWFR+DLRV DN +L  A   + +V+PVY FDP  Y +S  G  KTG +RA F  ++V+DLR +L  RG
Sbjct:    4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAVADLRASLRDRG 74          
BLAST of FC875514 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  461 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARG 673
            ++VWFRNDLR  D+E    A+        V+C DPR +  +  GF +TGP+RA FLIE+++DLR  L + G
Sbjct:    4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENLTDLRSRLRSLG 73          
The following BLAST results are available for this feature:
BLAST of FC875514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PHR2_ARATH2.672e-5961.66Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
CRYD_GLOVI2.703e-1957.75Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]
CRYD_SYNY32.618e-1446.48Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
CRYD_SOLLC4.466e-1455.56Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_XENLA5.833e-1452.00Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRYD_ORYSJ2.216e-1356.16Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_DANRE6.449e-1349.33Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
CRYD_ARATH8.423e-1352.78Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_NATPD4.622e-1149.30Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]
CRYD_RHOBA7.883e-1145.07Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]
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Properties
Property NameValue
Genbank descriptionC31404G07EF CTVClemen1 Citrus clementina cDNA clone C31404G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875514 ID=FC875514; Name=FC875514; organism=Citrus clementina; type=EST; length=678bp
GATCCCAACACCAAACACTAACGGCAGCTTATCTCCATCCAGTTCAGCTG
CAACACAATTTTCATCTTCCATCTTTAGGGTTGAAATGGATCCCAATAAG
CAAAATCTTGAAAACCCAGAAAACCATTCCAATGAGGAACAAAACCCACT
TGCGACTATCCCTTCTCAATCACCATTTGCCACTCTTTCCCTCTCATTTT
CTCTCCCCCAAGTCCTCCCAGCCAACACTTTCTTCATTCAACCCAAAATT
TCCACCTTATTTTCCCACCAACCAAACAAGGTCAAAGTCCCCACACAAGC
CTCTACGCTTACCCACATCTCTCTCTCCGCCTCCTCCACTCTCTCTCCTT
CCAAAATTTCATTCAAGTCCACACTCTCCGCAAACCCTCTTCAGAGCCCT
CTCTCTTTAGGGCCCCACCGCCCCTTGGACCCGAACAATGGGGCCGCAAT
TCGTCGAGCTTCCATTGTTTGGTTCCGCAACGACTTGCGGGTCCATGATA
ACGAATCTCTCAACACCGCCAATAACGAGAGCGTCTCTGTTTTGCCTGTT
TATTGTTTCGACCCGAGGGATTACGGCAAATCCTCTTCTGGCTTTGACAA
AACGGGGCCGTATCGGGCATCGTTTTTGATTGAGTCAGTTTCTGACCTTC
GCAAGAACTTGCANGCACGTGGGTCTGA
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