FC875520
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 1.884e-76 Identity = 132/194 (68.04%), Postives = 165/194 (85.05%), Query Frame = 1 Query: 79 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSS-NWGYMSRNYGAVWDTSRVPMG 651 SS ACDRC+H++K AYFS ASALSSGAC YGS+A SF GH+AA +PS+YKDGAGCGACFQ+RCKNP LCS KGT V++TDLN SNQTD V+SSRAF A++ G +D+LK G+VD+EY+RVPC+Y N+N+ VRVEE+S+KPNYL +K+LYQGGQTE+V++D+AQVGSS NWGYM+R++GAVW T +VP G Sbjct: 16 SSVNACDRCLHRSKAAYFSSASALSSGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTG 209 HSP 2 Score: 23.483 bits (49), Expect = 1.884e-76 Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 2 Query: 674 TSXYDGKWIWAKNV 715 T YDGK IW+++V Sbjct: 218 TGGYDGKMIWSQSV 231
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 4.180e-76 Identity = 130/193 (67.36%), Postives = 162/193 (83.94%), Query Frame = 1 Query: 79 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651 SSA ACDRC+H +K AYFS ASALSSGAC YGS+A F GH+AA +PS+YKDG+GCGACFQ+RCKNPTLCS KGT VI+TDLN +NQTD V+SSRAF A++ G +D+LK G+VD+EY+RVPC+Y N+ + VRVEESS+ PNYLA+K+LYQGGQTE+VA+ +AQVGSS+W YM+R++GAVW T +VP G Sbjct: 17 SSAAACDRCLHSSKAAYFSSASALSSGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTDKVPNG 209 HSP 2 Score: 24.2534 bits (51), Expect = 4.180e-76 Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3 Query: 645 NGALQFRFVVHXAMMASGFGQKM 713 NGALQFRFVV +G+ KM Sbjct: 208 NGALQFRFVV-----TAGYDGKM 225
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1) HSP 1 Score: 276.559 bits (706), Expect = 2.930e-74 Identity = 129/193 (66.84%), Postives = 158/193 (81.87%), Query Frame = 1 Query: 79 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQD--ILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651 SS ACDRC+H++K +YFS ASALSSGAC YG +A SF GH+AA +PS+YKDGAGCGACFQ+RCKNP LC+ KGT V++TDLN SNQTD V+SSRAF A++ G D +LK G+VDVEY+RVPC Y +NL VRVEE+S+KPNYLA+K+LYQGGQTE+V +D+A VGSS W YMSR++GAVW T +VP G Sbjct: 16 SSVNACDRCLHRSKASYFSSASALSSGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTG 208 HSP 2 Score: 23.8682 bits (50), Expect = 2.930e-74 Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2 Query: 674 TSXYDGKWIWAKNV 715 T YDGK +W+K V Sbjct: 217 TGGYDGKTVWSKRV 230
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 6.861e-58 Identity = 101/193 (52.33%), Postives = 140/193 (72.54%), Query Frame = 1 Query: 79 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEY-KNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651 S + CDRCV ++K + + AL++G+CGYGSLA SFNGGHLAA P+L++ G GCGACFQ+RCK+ LCS G +V++TD +N+TD V+S+ A+ A++ G + VDVEYKRVPCEY +NL++RVEE S+ P L+++ LYQGGQT++VA+DVA VGSSNW +M+R+YG W T++ P G Sbjct: 26 SMVSGCDRCVRRSKAGFRDSSIALNAGSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAG 218 HSP 2 Score: 26.5646 bits (57), Expect = 6.861e-58 Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2 Query: 674 TSXYDGKWIWA 706 T YDGKW+WA Sbjct: 227 TGGYDGKWVWA 237
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 8.944e-58 Identity = 102/211 (48.34%), Postives = 145/211 (68.72%), Query Frame = 1 Query: 22 SYLSH*TMVXXXXXXXXXXSSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGG-HLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651 S LSH + A+ CDRCV +++ AY++ + L++G+CGYG+ A +FNGG LAA P+LY+ G GCGAC+Q+RCK+ LCS G RV++TD +N+T V+SS AF A++ G + +L VDVEYKRVPCEY++++L+VRV+E S+ PN L + LYQGGQT++VA+DVAQVGSS+W +M+R +G W + P G Sbjct: 12 SSLSHHARLLLVIVALLAPRLASGCDRCVRRSRAAYYTSSLTLTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPSWSMANAPPG 222 HSP 2 Score: 26.9498 bits (58), Expect = 8.944e-58 Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 2 Query: 653 IAVQICGTSXYDGKWIWA 706 + +++ T YDGKW+WA Sbjct: 224 LQMRLVVTGGYDGKWVWA 241
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 4.780e-56 Identity = 99/194 (51.03%), Postives = 132/194 (68.04%), Query Frame = 1 Query: 85 ATACDRCVHQTKVAYFSQASAL---SSGACGYGSLALSF--NGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651 A+AC+RCV K AY S L G CGYG++A+ NGG LAAG P ++ G GCG CFQMRC+N +CS G RV+LTD + SN TDF++ AF L+ G + KL + VEY+R+PC+YK++NL++ VEE S++PN L +K LYQGGQT+++A+DVAQVGSS+W +M+R YG VW R P G Sbjct: 26 ASACERCVRNGKAAYSPSLSPLPPGGGGGCGYGAMAMEMELNGGFLAAGGPRQHRGGLGCGRCFQMRCRNAEVCSNAGVRVVLTDFHRSNSTDFLLGGPAFAGLAKPGMAHKLKKLDALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWRFMTRVYGPVWSIDRAPNG 219 HSP 2 Score: 26.5646 bits (57), Expect = 4.780e-56 Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2 Query: 674 TSXYDGKWIWA 706 T YDGKW+WA Sbjct: 228 TGGYDGKWVWA 238
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 1.375e-35 Identity = 77/197 (39.09%), Postives = 114/197 (57.87%), Query Frame = 1 Query: 79 SSATACDRCVHQTKVAYF--SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ-GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMGHCS 660 S ATA D ++ AY+ S +GAC YG+ + N G ++A SLY+DG GCGAC+Q+RC NP CS G +++TD S+ TDF++S AF ++ G +L LGVV +EY+RV C Y N+N+ ++ ESS PNYL ++ YQ G +++A+ + + + +SR +GAVW P G S Sbjct: 20 SKATA-DANFTVSRAAYYPNSDIKGTENGACEYGAFGATLNNGDVSASA-SLYRDGVGCGACYQVRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLS 214
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34 Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 1 Query: 157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651 G CGYG N G ++ L+ +G GCGAC+Q+RCK P CS +G V+ TD + TDF++S +A+ ++ G + GVV+VEY+R+PC Y NL ++ E S P+YLA+ VLY GG +++A++V Q W M R +GAV D P G Sbjct: 46 GHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRG 210
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA4_ORYSJ (Expansin-like A4 OS=Oryza sativa subsp. japonica GN=EXLA4 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33 Identity = 78/219 (35.62%), Postives = 129/219 (58.90%), Query Frame = 1 Query: 79 SSATACDRCVHQTKVAYF----SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL-------NHSNQT-----DFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYK-NQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGS--------SNWGYMSRNYGA--VWDTSRVPMG 651 ++A +CD C + + A+ L+ GACG+G+ + N +AA L++ G CGAC+Q+RC++ LC G +V++ D+ N+T F I+ AF A++ QG ++ + ++V+++R+PCEY+ ++ LAVRVEE+S+ P +LA++ LYQGGQT++ A+++AQ + S+W YM+R GA VW TSR P+G Sbjct: 30 AAAHSCDWCTPRHSTVSILPTPTHAAHLTGGACGFGAAPMELN---VAAVTADLFRHGHACGACYQLRCRDRRLCGEDGVKVVVADMAKQPEQEGEMNRTAGGSLQFRITEDAFAAMAKQGVSAHELTRQRTLEVDFRRIPCEYRESRRLAVRVEEASRNPTHLAIRFLYQGGQTDIAAVEIAQANATPPSSSYYSSWRYMTRRDGAPGVWTTSRAPVG 245
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26 Identity = 54/161 (33.54%), Postives = 93/161 (57.76%), Query Frame = 1 Query: 151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627 + GACGY + + G + G ++KDG GCG+CF+++C P CS K + +TD+N F +S AF A++ +GK +++ K G++D++++RV C+Y + E PNY AV V Y GG ++V +++ + GS W ++ ++GA+W Sbjct: 60 NGGACGYKDIDKAPFLGMNSCGNDPIFKDGKGCGSCFEVKCSKPEACSDKPVIIHITDMNTEPIAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVKVELKEKGSEEWKPLNESWGAIW 220 The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 53
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bpback to top |