FC875520

Overview
NameFC875520
Unique NameFC875520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10250 contig Ccv1_Contig10250:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 1.884e-76
Identity = 132/194 (68.04%), Postives = 165/194 (85.05%), Query Frame = 1
Query:   79 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSS-NWGYMSRNYGAVWDTSRVPMG 651
            SS  ACDRC+H++K AYFS ASALSSGAC YGS+A SF  GH+AA +PS+YKDGAGCGACFQ+RCKNP LCS KGT V++TDLN SNQTD V+SSRAF A++    G  +D+LK G+VD+EY+RVPC+Y N+N+ VRVEE+S+KPNYL +K+LYQGGQTE+V++D+AQVGSS NWGYM+R++GAVW T +VP G
Sbjct:   16 SSVNACDRCLHRSKAAYFSSASALSSGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTG 209          

HSP 2 Score: 23.483 bits (49), Expect = 1.884e-76
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  674 TSXYDGKWIWAKNV 715
            T  YDGK IW+++V
Sbjct:  218 TGGYDGKMIWSQSV 231          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 4.180e-76
Identity = 130/193 (67.36%), Postives = 162/193 (83.94%), Query Frame = 1
Query:   79 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651
            SSA ACDRC+H +K AYFS ASALSSGAC YGS+A  F  GH+AA +PS+YKDG+GCGACFQ+RCKNPTLCS KGT VI+TDLN +NQTD V+SSRAF A++    G  +D+LK G+VD+EY+RVPC+Y N+ + VRVEESS+ PNYLA+K+LYQGGQTE+VA+ +AQVGSS+W YM+R++GAVW T +VP G
Sbjct:   17 SSAAACDRCLHSSKAAYFSSASALSSGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTDKVPNG 209          

HSP 2 Score: 24.2534 bits (51), Expect = 4.180e-76
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  645 NGALQFRFVVHXAMMASGFGQKM 713
            NGALQFRFVV      +G+  KM
Sbjct:  208 NGALQFRFVV-----TAGYDGKM 225          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 2.930e-74
Identity = 129/193 (66.84%), Postives = 158/193 (81.87%), Query Frame = 1
Query:   79 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQD--ILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651
            SS  ACDRC+H++K +YFS ASALSSGAC YG +A SF  GH+AA +PS+YKDGAGCGACFQ+RCKNP LC+ KGT V++TDLN SNQTD V+SSRAF A++    G D  +LK G+VDVEY+RVPC Y  +NL VRVEE+S+KPNYLA+K+LYQGGQTE+V +D+A VGSS W YMSR++GAVW T +VP G
Sbjct:   16 SSVNACDRCLHRSKASYFSSASALSSGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTG 208          

HSP 2 Score: 23.8682 bits (50), Expect = 2.930e-74
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  674 TSXYDGKWIWAKNV 715
            T  YDGK +W+K V
Sbjct:  217 TGGYDGKTVWSKRV 230          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 6.861e-58
Identity = 101/193 (52.33%), Postives = 140/193 (72.54%), Query Frame = 1
Query:   79 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEY-KNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651
            S  + CDRCV ++K  +   + AL++G+CGYGSLA SFNGGHLAA  P+L++ G GCGACFQ+RCK+  LCS  G +V++TD    +N+TD V+S+ A+ A++  G    +     VDVEYKRVPCEY   +NL++RVEE S+ P  L+++ LYQGGQT++VA+DVA VGSSNW +M+R+YG  W T++ P G
Sbjct:   26 SMVSGCDRCVRRSKAGFRDSSIALNAGSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAG 218          

HSP 2 Score: 26.5646 bits (57), Expect = 6.861e-58
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  674 TSXYDGKWIWA 706
            T  YDGKW+WA
Sbjct:  227 TGGYDGKWVWA 237          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 8.944e-58
Identity = 102/211 (48.34%), Postives = 145/211 (68.72%), Query Frame = 1
Query:   22 SYLSH*TMVXXXXXXXXXXSSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGG-HLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651
            S LSH   +            A+ CDRCV +++ AY++ +  L++G+CGYG+ A +FNGG  LAA  P+LY+ G GCGAC+Q+RCK+  LCS  G RV++TD   +N+T  V+SS AF A++  G    + +L  VDVEYKRVPCEY++++L+VRV+E S+ PN L +  LYQGGQT++VA+DVAQVGSS+W +M+R +G  W  +  P G
Sbjct:   12 SSLSHHARLLLVIVALLAPRLASGCDRCVRRSRAAYYTSSLTLTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPSWSMANAPPG 222          

HSP 2 Score: 26.9498 bits (58), Expect = 8.944e-58
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  653 IAVQICGTSXYDGKWIWA 706
            + +++  T  YDGKW+WA
Sbjct:  224 LQMRLVVTGGYDGKWVWA 241          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 4.780e-56
Identity = 99/194 (51.03%), Postives = 132/194 (68.04%), Query Frame = 1
Query:   85 ATACDRCVHQTKVAYFSQASAL---SSGACGYGSLALSF--NGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651
            A+AC+RCV   K AY    S L     G CGYG++A+    NGG LAAG P  ++ G GCG CFQMRC+N  +CS  G RV+LTD + SN TDF++   AF  L+  G    + KL  + VEY+R+PC+YK++NL++ VEE S++PN L +K LYQGGQT+++A+DVAQVGSS+W +M+R YG VW   R P G
Sbjct:   26 ASACERCVRNGKAAYSPSLSPLPPGGGGGCGYGAMAMEMELNGGFLAAGGPRQHRGGLGCGRCFQMRCRNAEVCSNAGVRVVLTDFHRSNSTDFLLGGPAFAGLAKPGMAHKLKKLDALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWRFMTRVYGPVWSIDRAPNG 219          

HSP 2 Score: 26.5646 bits (57), Expect = 4.780e-56
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  674 TSXYDGKWIWA 706
            T  YDGKW+WA
Sbjct:  228 TGGYDGKWVWA 238          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.375e-35
Identity = 77/197 (39.09%), Postives = 114/197 (57.87%), Query Frame = 1
Query:   79 SSATACDRCVHQTKVAYF--SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ-GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMGHCS 660
            S ATA D     ++ AY+  S      +GAC YG+   + N G ++A   SLY+DG GCGAC+Q+RC NP  CS  G  +++TD   S+ TDF++S  AF  ++     G  +L LGVV +EY+RV C Y N+N+  ++ ESS  PNYL  ++ YQ G  +++A+ + +  +     +SR +GAVW     P G  S
Sbjct:   20 SKATA-DANFTVSRAAYYPNSDIKGTENGACEYGAFGATLNNGDVSASA-SLYRDGVGCGACYQVRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLS 214          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34
Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651
            G CGYG      N G ++     L+ +G GCGAC+Q+RCK P  CS +G  V+ TD    + TDF++S +A+  ++  G    +   GVV+VEY+R+PC Y   NL  ++ E S  P+YLA+ VLY GG  +++A++V Q     W  M R +GAV D    P G
Sbjct:   46 GHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRG 210          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXLA4_ORYSJ (Expansin-like A4 OS=Oryza sativa subsp. japonica GN=EXLA4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 78/219 (35.62%), Postives = 129/219 (58.90%), Query Frame = 1
Query:   79 SSATACDRCVHQTKVAYF----SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL-------NHSNQT-----DFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYK-NQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGS--------SNWGYMSRNYGA--VWDTSRVPMG 651
            ++A +CD C  +          + A+ L+ GACG+G+  +  N   +AA    L++ G  CGAC+Q+RC++  LC   G +V++ D+          N+T      F I+  AF A++ QG    ++ +   ++V+++R+PCEY+ ++ LAVRVEE+S+ P +LA++ LYQGGQT++ A+++AQ  +        S+W YM+R  GA  VW TSR P+G
Sbjct:   30 AAAHSCDWCTPRHSTVSILPTPTHAAHLTGGACGFGAAPMELN---VAAVTADLFRHGHACGACYQLRCRDRRLCGEDGVKVVVADMAKQPEQEGEMNRTAGGSLQFRITEDAFAAMAKQGVSAHELTRQRTLEVDFRRIPCEYRESRRLAVRVEEASRNPTHLAIRFLYQGGQTDIAAVEIAQANATPPSSSYYSSWRYMTRRDGAPGVWTTSRAPVG 245          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 54/161 (33.54%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + GACGY  +  +   G  + G   ++KDG GCG+CF+++C  P  CS K   + +TD+N        F +S  AF A++ +GK +++ K G++D++++RV C+Y  +       E    PNY AV V Y GG  ++V +++ + GS  W  ++ ++GA+W
Sbjct:   60 NGGACGYKDIDKAPFLGMNSCGNDPIFKDGKGCGSCFEVKCSKPEACSDKPVIIHITDMNTEPIAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVKVELKEKGSEEWKPLNESWGAIW 220          
The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EXLA1_ARATH1.884e-7668.04Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 ... [more]
EXLA2_ARATH4.180e-7667.36Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 ... [more]
EXLA3_ARATH2.930e-7466.84Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 ... [more]
EXLA2_ORYSJ6.861e-5852.33Expansin-like A2 OS=Oryza sativa subsp. japonica G... [more]
EXLA1_ORYSJ8.944e-5848.34Expansin-like A1 OS=Oryza sativa subsp. japonica G... [more]
EXLA3_ORYSJ4.780e-5651.03Expansin-like A3 OS=Oryza sativa subsp. japonica G... [more]
EXLB1_ORYSJ1.375e-3539.09Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]
EXLB1_ARATH9.851e-3440.00Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXLA4_ORYSJ6.385e-3335.62Expansin-like A4 OS=Oryza sativa subsp. japonica G... [more]
EXB10_ORYSJ1.989e-2633.54Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC31404H01EF CTVClemen1 Citrus clementina cDNA clone C31404H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bp
GGTCAAATTTTTGCATTTGTATCCTATCTTTCTCATTAAACAATGGTTTT
GTTTCTTTGCTTTCTCTTCTTTCTCTTCTCTTCTGCTACTGCTTGTGATC
GCTGTGTGCACCAAACCAAGGTTGCTTATTTCTCCCAAGCCTCTGCACTT
TCATCCGGGGCATGTGGATATGGTTCATTAGCATTAAGCTTCAATGGTGG
ACACCTTGCTGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTGGTTGTG
GTGCATGCTTTCAAATGAGATGCAAGAACCCAACTCTGTGTAGCGGCAAA
GGAACCAGAGTGATTCTGACTGATCTCAATCACAGCAACCAAACAGATTT
TGTTATCAGCAGCAGAGCTTTCATGGCCTTATCCAACCAGGGCAAGGGCC
AAGACATTTTAAAACTTGGAGTTGTCGATGTAGAATACAAAAGGGTTCCA
TGTGAATATAAAAACCAGAACTTGGCTGTGCGTGTGGAAGAATCAAGTCA
AAAACCAAATTATTTAGCAGTTAAAGTGTTGTATCAGGGTGGTCAAACAG
AAATGGTAGCAATGGATGTAGCTCAGGTTGGTTCTTCAAACTGGGGTTAC
ATGAGCAGAAATTATGGGGCAGTTTGGGATACAAGTAGAGTGCCAATGGG
GCATTGCAGTTCAGATTTGTGGTACATCANGCTATGATGGCAAGTGGATT
TGGGCAAAAAATGTCTTCAGCTGATTGG
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