FC875526

Overview
NameFC875526
Unique NameFC875526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875526_ssr54 microsatellite FC875526_ssr54:54..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10236 contig Ccv1_Contig10236:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875526 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.629e-46
Identity = 97/159 (61.01%), Postives = 116/159 (72.96%), Query Frame = 2
Query:  239 MDPQIYG-------LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTEQAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLI 694
            MD +IYG         FF +L+  + +AL    +            VLVALLDS YTE AELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTLLMFHI+P+R+GS  WP E+SG  KH+TL ND V LS+   K+++
Sbjct:    1 MDRRIYGGSAVIHLFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRLSNGQGKKMV 159          
BLAST of FC875526 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 98/165 (59.39%), Postives = 115/165 (69.70%), Query Frame = 2
Query:  239 MDPQIYG-------LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTEQAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFV-HLS---SKSSKRLIGS 700
            MD  IYG        +FFFLL   ++ +  H  T            VLVALLDS YTE AELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDP+FKRFLL+PGN+KSLQTLL+ HI+P R+GS  WP+E SG  KH TL +D V HLS     + KRL+ S
Sbjct:    1 MDRCIYGCSVITIFFSFFFLLNASALESGHHNITGSGQINSNS---VLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNS 162          
BLAST of FC875526 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.962e-37
Identity = 86/138 (62.32%), Postives = 97/138 (70.29%), Query Frame = 2
Query:  260 LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTEQAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSS 673
            L FF LL +   TALP K              VLVALLDSHYTE AELVEKALLLQTLEEAVG+HNITIFAP+N+ALE+ LDPEFK FLL+P N+KSLQ+LLMFHILP RI S   P   S    H TL ND +H ++
Sbjct:    7 LLFFLLLTISITTALPDKP----GSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITS---PQFSSAVVSHRTLSNDHLHFTN 137          
BLAST of FC875526 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.996e-36
Identity = 85/139 (61.15%), Postives = 95/139 (68.35%), Query Frame = 2
Query:  254 YGLAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTEQAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLS 670
            YG   F LL+  + +                   VLVALLDSHYTE AELVEKALLLQTLEEAVG+HNITIFAP+N+ALER LDP FK FLLEP N+KSLQ+LLMFHILP RI S  WP   S S  H TL ND +HL+
Sbjct:    5 YGATKFLLLLFLTTSIATALPDNKPVPGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWP---SLSHHHRTLSNDHLHLT 140          
The following BLAST results are available for this feature:
BLAST of FC875526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH1.629e-4661.01Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA18_ARATH9.252e-4259.39Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA15_ARATH8.962e-3762.32Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
FLA16_ARATH1.996e-3661.15Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC31404H07EF CTVClemen1 Citrus clementina cDNA clone C31404H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875526 ID=FC875526; Name=FC875526; organism=Citrus clementina; type=EST; length=700bp
GGTGCTTCTTTTAGGTGTAGTTTCCCCATTCACTTGCTCAGTCGCGTGTC
TCACTCTCCTCTCCTCTCCTCTAACCACAAAGCAAAGCTTACCAAAAAAG
CTATAACGCCAAAGCTAAATCCCACCACCGAACAAGACCCACACGCAAAC
ACAGATTCATACGAATACAAAGCTCTCACATTTTGTCCATTCTTTGCAAA
GGAATTGCGTCTTTCGTCAACCGCAATCTTTGAGAGCCATGGATCCTCAA
ATCTATGGCCTCGCTTTCTTCTTCCTGTTGGTTGTTCCCTCCGTCACCGC
ATTGCCTCACAAAACGACATCGTCTTCGTCGCAACCTCAAATCAACTCCA
ACTCAGTTCTCGTCGCGCTTCTGGACTCGCATTACACTGAACAGGCCGAG
CTAGTTGAAAAGGCTCTCCTATTACAGACCCTCGAAGAAGCCGTCGGCAG
ACACAACATTACCATTTTTGCCCCTAAGAACGAAGCGCTAGAGCGCGAGC
TCGACCCGGAGTTCAAGCGGTTCTTACTCGAACCCGGCAACGTCAAGTCC
TTACAGACCCTCTTGATGTTCCACATTCTCCCCAGCCGAATCGGATCCCG
CAACTGGCCCGACGAGAAATCCGGCTCCAGAAAGCACAACACTCTCTGGA
ACGATTTCGTCCACTTGTCGAGCAAGAGCAGTAAAAGACTCATCGGTTCG
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