FC875528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_BOVIN (Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21 Identity = 57/149 (38.26%), Postives = 85/149 (57.05%), Query Frame = 3 Query: 207 ERVKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653 E ++ + P ALLK ++E + + ++VQ+L KV+ YPT G+S LE K LLL Y + + +L KA G S++ HP V LVEIR LEK+RP+D+KL+YQI KL V G+ E D L+++P+P ++ Sbjct: 5 EVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------NDPLRFKPHPSNMM 138
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_MOUSE (Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20 Identity = 55/149 (36.91%), Postives = 84/149 (56.38%), Query Frame = 3 Query: 207 ERVKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653 E ++ + LLK ++E + + +++Q+L TKV+ Y T G+S+LE K LLL Y + + +L KA G S++ HP V LVEIR LEK+RP+D+KL+YQI KL V G+ E D L+++P+P +V Sbjct: 5 EVLESDVSSSITLLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------NDPLRFKPHPSNMV 138
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_HUMAN (Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20 Identity = 54/147 (36.73%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653 ++ + P LLK ++E + + ++V+SL KV+ YPT G+S+LE K LLL Y + + +L KA G S++ H V LVEIR LEK+RP+D+KL+YQI KL V G+ E D L+++P+P ++ Sbjct: 7 LESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSE---------------NDPLRFKPHPSNMM 138
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_XENTR (Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19 Identity = 54/149 (36.24%), Postives = 83/149 (55.70%), Query Frame = 3 Query: 207 ERVKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653 E + ++ P L + +++ + K+ + VQ+L KV+ Y T G+S+LE K LLL Y Q + + +L K G SI+ +P + LVE+R LEK+RPID+KL+YQI KL V G+ E D L+++PNP L+ Sbjct: 6 EIILEDVPASVNLFRTLQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVRASVTGSLGE---------------NDPLRFKPNPQNLI 139
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDNB_XENLA (Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-B PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 53/147 (36.05%), Postives = 81/147 (55.10%), Query Frame = 3 Query: 213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653 + ++ P L +++ + K+ + VQ L KV+ + Y T G+S+LE K LLL Y Q + + +L K G SI+ +P + LVE+R LEK+RPID+KL+YQI KL V G+ E D L+++PNP L+ Sbjct: 7 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------NDPLRFKPNPQNLM 138
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_DANRE (Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18 Identity = 52/153 (33.99%), Postives = 83/153 (54.25%), Query Frame = 3 Query: 195 SISDERVKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653 ++ ++ + ++ P LL + E + + S V+ LI KV+ Y T G+S+L+ ++ LLL Y Q I + + K +G S++++ + LV IR LEK+RP+D+KL+YQI KL V G+ E D L +RPNP LV Sbjct: 5 AVGNDVIDRDLPTAVRLLNSLTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLLLFYLQDITHLISLKTEGESLKDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTGSLSE---------------NDPLHFRPNPQSLV 142
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDNA_XENLA (Neuroguidin-A OS=Xenopus laevis GN=ngdn-A PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 3 Query: 213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653 + ++ P L +++ + K+ + VQ L KV+ Y T G+S+LE K LLL Y Q + + +L K G SI+ +P + LVE+R LEK+RPID+KL+YQI KL V G+ E D L+++PNP L+ Sbjct: 8 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------NDPLRFKPNPQNLM 139
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: SAS10_RAT (Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15 Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSA 584 ++KE+P+L L++++K L +++ +++ LI V+ P G YL+ K+ L LNYC +I +YL+ KA+ + HPV+ LV R + K+ +D+KL +I+ L + + G + +NP A Sbjct: 215 LRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGK-KDLNPKA 337
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: SAS10_MOUSE (Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.933e-14 Identity = 38/113 (33.63%), Postives = 70/113 (61.95%), Query Frame = 3 Query: 213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVG 551 +KKE+P+L L+++++ L +++ +++ L+ V+ PT G YL+ K+ L LNYC +I +YL+ KA+ + HPV+ LV R + K+ +D+KL +I+ L + + G Sbjct: 215 LKKESPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDG 327
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: SAS10_HUMAN (Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13 Identity = 36/111 (32.43%), Postives = 68/111 (61.26%), Query Frame = 3 Query: 213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 545 ++KE+P+L L++++K L +++ +++ L+ V+ P G YL K+ L LNYC +I +YL+ KA+ + HPV+ LV R + K+ +D+KL +I+ L +++ Sbjct: 219 LRKESPELLELIEDLKVKLTEVKDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLK 329 The following BLAST results are available for this feature:
BLAST of FC875528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875528 ID=FC875528; Name=FC875528; organism=Citrus clementina; type=EST; length=667bpback to top |