FC875535

Overview
NameFC875535
Unique NameFC875535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9441 contig Ccv1_Contig9441:21..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875535 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.820e-30
Identity = 77/166 (46.39%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  216 VAQNDAGSAAGLDLSGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRPVSKNPYPVQSEAKASD 713
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDR V+KNPYP  S+ K +D
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172          
BLAST of FC875535 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  330 LAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRPVSKNPY-PVQSEAKASDT 716
            + P+QLTI +GG   VFD IPA+KV+EI+ IAA+ A  T T        N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V   PY    SEA  ++T
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAA-AKATET-------INLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNET 233          
BLAST of FC875535 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  345 LTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPR--AQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRPVSKNPYPVQSEAKAS 710
            LTIFYGG+V VFD   A+K +E++ +A   +  + T    + + N  A S        + S+ + + SP   A   P+Q N    L  ELP+ARR SL RF EKR+DR  SK PY +   A+AS
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEAS 237          
BLAST of FC875535 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 3
Query:  339 TQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVT--NTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRPVSKNPYPVQSEA 701
            +QLTIF+GGKV V++  P DK +EIM +A  +  VT  N      D+ N   SS VL   P L          + Q    ++N + +      +ARR SL RFF KR+DR V++ PY V   A
Sbjct:   97 SQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVL---PDLNEPTDNNHLTKEQQQQQEQNQIVE-----RIARRASLHRFFAKRKDRAVARAPYQVNQNA 211          
The following BLAST results are available for this feature:
BLAST of FC875535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TIF3B_ARATH1.820e-3046.39Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH5.321e-1443.08Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH3.449e-1339.52Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH8.495e-1238.21Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionC31405A04EF CTVClemen1 Citrus clementina cDNA clone C31405A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875535 ID=FC875535; Name=FC875535; organism=Citrus clementina; type=EST; length=746bp
TCGCCGGGGAAAAAGGCAAAATCAAAATTAAAACCAAAGCAAAGGCGAGG
AAGCTGCGAGAGAAAATTAAAAAAAATTGAAAAAAATCGAAGAAGAAGAG
GAAGGAGTCTGGAAATTTCTCGAGTTTAATTCAAATGGAGGAATTTGGGA
CTGTTGATGAAGTGAAGCCGAAGGCTGAGGCCGGAATGGAAGTAGACGAT
AAGAAGAAGCATGAGGTTGCGCAAAACGACGCCGGATCTGCTGCAGGGCT
TGATTTGTCGGGGAACGAGGTGTTTAACAACACCATCAGGGCCACGGCAA
TCCCAACTTCTGGAGTGAATGCCACGGACCTTGCTCCAACTCAGCTTACG
ATCTTCTATGGTGGAAAAGTGTGTGTATTTGATGCCATTCCGGCAGACAA
GGTTCGTGAAATTATGCTTATTGCTGCCTCTTCTGCCACTGTTACTAACA
CAAGTGACATGAAGAAGGACGATACCAACTGTCCTGCCTCTTCACCAGTT
CTAACAAGGTCTCCTTCACTGCAAAGCACTGCAAGTGCTTTGGCATCACC
TCGGGCACAATCATATCCTGTTCAAAGGAATCTCCTCTGCAAATTGCAAG
CTGAACTACCAATGGCAAGGAGGCATTCCCTTCAGCGATTTTTCGAGAAG
CGACGTGACAGGCCGGTGAGCAAGAATCCATATCCTGTTCAATCAGAGGC
AAAAGCTTCTGACACCAAGCTCAGACTCCTGCAGAAGCAGGTTGCT
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