FC875540

Overview
NameFC875540
Unique NameFC875540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10255 contig Ccv1_Contig10255:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.262e-39
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 2
Query:  440 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            MALQNIGASN DDAFYRYKMP+MITKIEGRGNGIKTNVVNMVDIAKALARP SYTTKYFG ELGAQSKFDEKTG SLV+GAHDTAK
Sbjct:    1 MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGAHDTAK 86          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 2
Query:  440 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            MALQNIGA NSDDAFYRYKMP+M+TKIEGRGNGIKTNVVNMVDIAK LARP SYTTKYFG ELGAQSKFDEKTGTS V+GAH+TAK
Sbjct:    1 MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHETAK 86          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 2
Query:  440 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            MALQNIGASN DDAFYRYKMP+M+TKIEGRGNGIKTNVVNMV+IAKAL RP +YTTKYFG ELGAQSKFDEK GTSLV+GAHDT+K
Sbjct:    1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFGCELGAQSKFDEKNGTSLVNGAHDTSK 86          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.210e-37
Identity = 73/86 (84.88%), Postives = 82/86 (95.35%), Query Frame = 2
Query:  440 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            MALQNIGASN +DAFYRYKMPKM+TK EG+GNGIKTN++N V+IAKALARPPSYTTKYFG ELGAQSKFDEKTGTSLV+GAH+T+K
Sbjct:    1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFGCELGAQSKFDEKTGTSLVNGAHNTSK 86          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_RAT (Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  452 NIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            N+  S SD  FYRYKMP++I K+EG+GNGIKT +VNMVD+AKAL RPP+Y TKYFG ELGAQ++FD K    +V+G+H+  K
Sbjct:    4 NVNRSVSDQ-FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANK 84          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_PONAB (Eukaryotic translation initiation factor 5 OS=Pongo abelii GN=EIF5 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  452 NIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            N+  S SD  FYRYKMP++I K+EG+GNGIKT +VNMVD+AKAL RPP+Y TKYFG ELGAQ++FD K    +V+G+H+  K
Sbjct:    4 NVNRSVSDQ-FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANK 84          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_MOUSE (Eukaryotic translation initiation factor 5 OS=Mus musculus GN=Eif5 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  452 NIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            N+  S SD  FYRYKMP++I K+EG+GNGIKT +VNMVD+AKAL RPP+Y TKYFG ELGAQ++FD K    +V+G+H+  K
Sbjct:    4 NVNRSVSDQ-FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANK 84          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_HUMAN (Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  452 NIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            N+  S SD  FYRYKMP++I K+EG+GNGIKT +VNMVD+AKAL RPP+Y TKYFG ELGAQ++FD K    +V+G+H+  K
Sbjct:    4 NVNRSVSDQ-FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANK 84          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_CAEEL (Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans GN=C37C3.2 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  476 DAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            D FYRYKMPK+  K+EG+GNGIKT + NM +IAKAL RPP Y TKYFG ELGAQ+ FD K    +V+G HD  K
Sbjct:   11 DPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANK 84          
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_DROME (Eukaryotic translation initiation factor 5 OS=Drosophila melanogaster GN=eIF5 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  440 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            MA  N+  S +D  FYRYKMP++  K+EG+GNGIKT +VNM ++A+A+ RP +Y TKYFG ELGAQ+ FD K    +V+G+HD  K
Sbjct:    1 MATVNVNRSVTD-IFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNK 85          
The following BLAST results are available for this feature:
BLAST of FC875540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
IF5_MAIZE4.262e-3993.02Eukaryotic translation initiation factor 5 OS=Zea ... [more]
IF5_PHAVU6.154e-3889.53Eukaryotic translation initiation factor 5 OS=Phas... [more]
IF5Y_ARATH3.054e-3787.21Probable eukaryotic translation initiation factor ... [more]
IF5Z_ARATH5.210e-3784.88Probable eukaryotic translation initiation factor ... [more]
IF5_RAT4.282e-2362.20Eukaryotic translation initiation factor 5 OS=Ratt... [more]
IF5_PONAB4.282e-2362.20Eukaryotic translation initiation factor 5 OS=Pong... [more]
IF5_MOUSE4.282e-2362.20Eukaryotic translation initiation factor 5 OS=Mus ... [more]
IF5_HUMAN4.282e-2362.20Eukaryotic translation initiation factor 5 OS=Homo... [more]
IF5_CAEEL8.928e-2163.51Eukaryotic translation initiation factor 5 OS=Caen... [more]
IF5_DROME3.393e-2054.65Eukaryotic translation initiation factor 5 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionC31405A09EF CTVClemen1 Citrus clementina cDNA clone C31405A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875540 ID=FC875540; Name=FC875540; organism=Citrus clementina; type=EST; length=699bp
GCTCGCATTATCCTCTCTTCGCACCGCATCGCATCGTATCTAAATCGGAG
CTTCGTCTTCAATCTCTCTGTGTTTATATCATCATCTTATCATCTCAGAG
GAAGTTGGCAGTTTAGTCTGCTGAGTTGCAGTCACAAAGTGGAGAGTGTT
AAGTCTGAAGCTTTTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATC
AATTGGTTTGCTTGGAGAGTATTTCCCTACGTCTAGAAAAAAGAGCGGAC
ATTCTTCTCATAAAGTTGGCTGCATGCATCTTGGCGCATCTGAGGCATAT
ACAACACGTATTGATTGCCTGTTTATGCGACCTTTTCCGATTGCAAGGAA
CTTGTCGGTTGAAGGGGGATTTCTTGTTGAAAGAGACAATACTACTGCTT
GTTCATTAGCTTTCTGATTAATCTTACAAATCTATCAAGATGGCCTTGCA
AAACATTGGTGCTTCCAATAGCGATGATGCCTTTTATAGGTATAAGATGC
CGAAGATGATAACTAAGATTGAAGGAAGAGGGAATGGCATCAAAACCAAC
GTGGTTAACATGGTTGATATTGCTAAGGCCTTGGCCAGGCCTCCATCTTA
CACAACAAAATATTTTGGTAATGAGCTGGGAGCCCAGTCTAAATTTGATG
AAAAGACCGGAACCTCTCTTGTNCATGGGGCCCATGACACTGCCAAGCT
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