FC875546

Overview
NameFC875546
Unique NameFC875546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10256 contig Ccv1_Contig10256:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUC2_ARATH (Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 2.789e-73
Identity = 138/207 (66.67%), Postives = 157/207 (75.85%), Query Frame = 3
Query:   99 SSIELRQXXXXXXXXMWKIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT-SQSLRRYCA 716
            S++E +         + KI+ V+SIAAGVQFGWALQLSLLTPYVQLLGIPHKW+SLIWLCGPISGM+VQPIVG+HSD C SRFGRRRP                 +AADIGHS GD +    KTRAI IF +GFWILDVANNTLQGPCRA LADLS  + KKTRTAN+FFSFFMAVG VLGYAAGSY +LY ++PFT ++S   YCA
Sbjct:   14 SALETQTGELDQPERLRKIISVSSIAAGVQFGWALQLSLLTPYVQLLGIPHKWASLIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYAADIGHSMGDQLDKPPKTRAIAIFALGFWILDVANNTLQGPCRAFLADLSAGNAKKTRTANAFFSFFMAVGNVLGYAAGSYRNLYKVVPFTMTESCDLYCA 220          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUC1_ARATH (Sucrose transport protein SUC1 OS=Arabidopsis thaliana GN=SUC1 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.869e-72
Identity = 136/213 (63.85%), Postives = 159/213 (74.65%), Query Frame = 3
Query:   84 PTKNQSSIELRQXXXXXXXX-MWKIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT-SQSLRRYCA 716
            PTK+ +++E +          + KI+ VASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGP+SGMIVQPIVGFHSD C+S+FGRRRP                 +AAD G+  GD + + VK RAI IF +GFWILDVANNTLQGPCRA LADL+    K+TR AN+FFSFFMAVG VLGYAAGSYT+L+ M PFT +++   YCA
Sbjct:    9 PTKDAAALETQSPEDFDQPSPLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPVSGMIVQPIVGFHSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADFGYKMGDKLEEKVKVRAIGIFALGFWILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFFSFFMAVGNVLGYAAGSYTNLHKMFPFTMTKACDIYCA 221          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUC6_ARATH (Putative sucrose transport protein SUC6 OS=Arabidopsis thaliana GN=SUC6 PE=5 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 4.452e-71
Identity = 129/192 (67.19%), Postives = 149/192 (77.60%), Query Frame = 3
Query:  144 MWKIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT-SQSLRRYCA 716
            M K++ VASIAAG+QFGWALQLSLLTPYVQLLG+PHKWSS IWLCGP+SG++VQP VG+ SD CKSRFGRRRP                 +AAD GHS GD V + VK RA++IF +GFWILDVANNTLQGPCRA L DL+    KKTRTAN+FFSFFMAVG VLGYAAGSYT+LY + PFT +++   YCA
Sbjct:   30 MRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAADFGHSMGDKVDEPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCA 221          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUC5_ARATH (Sucrose transport protein SUC5 OS=Arabidopsis thaliana GN=SUC5 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.595e-71
Identity = 132/190 (69.47%), Postives = 149/190 (78.42%), Query Frame = 3
Query:  150 KIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT-SQSLRRYCA 716
            KI+ VASIAAGVQFGWALQLSLLTPY+QLLGIPHKWSS +WLCGPISGMIVQPIVG+HSD C+SRFGRRRP                  AAD+GHS GD + + V+TRAIIIF+ GFW LDVANNTLQGPCRA LADL+    KKTR AN+ FSFFMAVG VLGYAAGSYT+L+ M PFT +++   YCA
Sbjct:   33 KIISVASIAAGVQFGWALQLSLLTPYIQLLGIPHKWSSYMWLCGPISGMIVQPIVGYHSDRCESRFGRRRPFIAAGVALVAVSVFLIGFAADMGHSFGDKLENKVRTRAIIIFLTGFWFLDVANNTLQGPCRAFLADLAAGDAKKTRVANACFSFFMAVGNVLGYAAGSYTNLHKMFPFTMTKACDIYCA 222          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUC8_ARATH (Sucrose transport protein SUC8 OS=Arabidopsis thaliana GN=SUC8 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.097e-69
Identity = 126/190 (66.32%), Postives = 146/190 (76.84%), Query Frame = 3
Query:  150 KIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT-SQSLRRYCA 716
            K++ VASIAAG+QFGWALQLSLLTPYVQLLG+PHKWSS IWLCGP+SG++VQP VG+ SD C SRFGRRRP                 +AAD GHS GD +   VK RA++IF +GFWILDVANNTLQGPCRA L DL+    KKTRTAN+FFSFFMAVG VLGYAAGSYT+LY + PFT +++   YCA
Sbjct:   32 KMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCA 221          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUC7_ARATH (Putative sucrose transport protein SUC7 OS=Arabidopsis thaliana GN=SUC7 PE=5 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.212e-68
Identity = 124/190 (65.26%), Postives = 145/190 (76.32%), Query Frame = 3
Query:  150 KIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT-SQSLRRYCA 716
            K++ VASIAAG+QFGWALQLSLLTPYVQLLG+PHKW S IWLCGP+SG++VQP VG+ SD C SRFGRRRP                 +AAD GHS GD +   VK RA++IF +GFWILDVANNTLQGPCRA L DL+    +KTRTAN+FFSFFMAVG VLGYAAGSYT+LY + PFT +++   YCA
Sbjct:   31 KMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWPSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCA 220          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUC9_ARATH (Sucrose transport protein SUC9 OS=Arabidopsis thaliana GN=SUC9 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.701e-68
Identity = 125/190 (65.79%), Postives = 146/190 (76.84%), Query Frame = 3
Query:  150 KIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT-SQSLRRYCA 716
            K++ VASIAAG+QFGWALQLSLLTPYVQLLG+PHKWSS IWLCGPISG++VQP VG+ SD CKSRFGRRRP                  AAD GH+ GD + ++VK RA+  FV+GFWILDVANNTLQGPCRA L DL+    KKTRTAN+ FSFFMAVG VLGYAAGSYT+L+ + PFT +++   YCA
Sbjct:   32 KMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPISGLLVQPTVGYFSDRCKSRFGRRRPFIATGALLVALAVILIGFAADFGHTMGDKLDEAVKIRAVGFFVVGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAIFSFFMAVGNVLGYAAGSYTNLHKIFPFTVTKACDIYCA 221          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUT_SPIOL (Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.651e-65
Identity = 122/190 (64.21%), Postives = 144/190 (75.79%), Query Frame = 3
Query:  150 KIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT-SQSLRRYCA 716
            K+ +VAS+AAGVQFGWALQLSLLTPYVQLLGIPH W++ IWLCGPISGMIVQP+VG++SD C SRFGRRRP                  AADIG ++GD   +  K RAI +FV+GFWILDVANNTLQGPCRALLAD++  S  KTR AN+FFSFFMA+G + GYAAGSY+ LY + PFT + +   YCA
Sbjct:   37 KLGLVASVAAGVQFGWALQLSLLTPYVQLLGIPHTWAAYIWLCGPISGMIVQPLVGYYSDRCTSRFGRRRPFIAAGAALVAVAVGLIGFAADIGAASGDPTGNVAKPRAIAVFVVGFWILDVANNTLQGPCRALLADMAAGSQTKTRYANAFFSFFMALGNIGGYAAGSYSRLYTVFPFTKTAACDVYCA 226          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUC4_ARATH (Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.373e-58
Identity = 108/179 (60.34%), Postives = 129/179 (72.07%), Query Frame = 3
Query:  153 IVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT 689
            ++ VAS+A G+QFGWALQLSLLTPYVQ LGIPH W+S+IWLCGP+SG+ VQP+VG  SD C S++GRRRP                 HAADIG + GD     +K RAI+ FV+GFWILDVANN  QGPCRALLADL+ + N++TR AN +FS FMAVG VLGYA GSY   Y +  FT
Sbjct:   43 LLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSSDRCTSKYGRRRPFIVAGAVAISISVMVIGHAADIGWAFGDR-EGKIKPRAIVAFVLGFWILDVANNMTQGPCRALLADLTENDNRRTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFT 220          
BLAST of FC875546 vs. ExPASy Swiss-Prot
Match: SUT2_ORYSJ (Sucrose transport protein 2 OS=Oryza sativa subsp. japonica GN=SUT2 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 8.730e-51
Identity = 98/184 (53.26%), Postives = 128/184 (69.57%), Query Frame = 3
Query:  150 KIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDT---CKSRFGRRRPXXXXXXXXXXXXXXXXXHAADIGHSAGDSVTD-SVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGYVLGYAAGSYTHLYHMLPFT 689
            K++  AS+A GVQFGWALQLSLLTPYVQ LGIPH ++SL+WLCGP+SG++VQP+VG  SD      S  GRRRP                  +AD+G   GDS+T  S +  AII++++GFW+LDV NN  QGPCRA LADL+ +  ++TR AN++FS FMA+G +LGYA G+Y+  Y + PFT
Sbjct:   26 KLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLVGHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAIIVYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYSGWYKIFPFT 209          
The following BLAST results are available for this feature:
BLAST of FC875546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SUC2_ARATH2.789e-7366.67Sucrose transport protein SUC2 OS=Arabidopsis thal... [more]
SUC1_ARATH6.869e-7263.85Sucrose transport protein SUC1 OS=Arabidopsis thal... [more]
SUC6_ARATH4.452e-7167.19Putative sucrose transport protein SUC6 OS=Arabido... [more]
SUC5_ARATH7.595e-7169.47Sucrose transport protein SUC5 OS=Arabidopsis thal... [more]
SUC8_ARATH1.097e-6966.32Sucrose transport protein SUC8 OS=Arabidopsis thal... [more]
SUC7_ARATH1.212e-6865.26Putative sucrose transport protein SUC7 OS=Arabido... [more]
SUC9_ARATH2.701e-6865.79Sucrose transport protein SUC9 OS=Arabidopsis thal... [more]
SUT_SPIOL3.651e-6564.21Sucrose transport protein OS=Spinacia oleracea PE=... [more]
SUC4_ARATH7.373e-5860.34Sucrose transport protein SUC4 OS=Arabidopsis thal... [more]
SUT2_ORYSJ8.730e-5153.26Sucrose transport protein 2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC31405B03EF CTVClemen1 Citrus clementina cDNA clone C31405B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875546 ID=FC875546; Name=FC875546; organism=Citrus clementina; type=EST; length=722bp
GGATCACATATTAACGATATTTTGGTAGCTTAATTAGTTGGCTGGCCATG
GAGAGTACCGAAGCAGGCGCAGCTGCAGCAGCACCGACAAAGAATCAATC
CTCAATTGAGTTACGGCAGCCACCACCTCCGCCGTCGTCCCCGATGTGGA
AGATCGTAATGGTGGCGTCCATAGCAGCGGGGGTGCAATTCGGGTGGGCC
CTGCAGCTCTCTCTTTTGACCCCCTACGTTCAGCTCCTGGGCATCCCTCA
CAAATGGTCTTCCCTCATTTGGCTCTGCGGCCCCATCTCCGGCATGATCG
TCCAGCCCATCGTCGGCTTCCACAGCGACACCTGCAAATCCCGCTTCGGC
CGTCGCCGCCCCTTCATTCTCGCCGGCGCCGTCCTCGTCGCCATCGCTGT
GTTTCTCATCGGCCACGCCGCCGACATAGGCCACTCCGCGGGCGACTCCG
TTACCGATTCCGTCAAAACCCGCGCCATCATCATCTTCGTCATCGGCTTC
TGGATTCTCGACGTTGCGAATAACACATTACAAGGCCCATGCAGAGCCCT
CCTCGCCGATCTCTCCGGCAGCAGCAACAAGAAAACAAGAACCGCAAACT
CGTTTTTCTCCTTCTTCATGGCCGTCGGNTACGTGCTTGGCTATGCCGCC
GGCTCCTACACTCACTTGTACCACATGCTTCCGTTCACAAGTCAAAGCTT
GCGACGTTACTGTGCAATTTGA
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