FC875549

Overview
NameFC875549
Unique NameFC875549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10257 contig Ccv1_Contig10257:1..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.144e-85
Identity = 159/206 (77.18%), Postives = 182/206 (88.35%), Query Frame = 2
Query:  110 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFR-FL*EVSMTGLILNGR 724
            PDHLFNLRNNFYLGAYQ AINNS++ NL P++AVERDCLV+RSYIALGSYQLVISEIDESAATPLQAVKLLA+YLS+P NKESTISSLKEWL+D  IG+N TLRLIAGI+FMHEEDYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNLAV   + ++    F  F  +  MT LILNG+
Sbjct:    8 PDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTCLILNGK 213          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.327e-85
Identity = 155/206 (75.24%), Postives = 183/206 (88.83%), Query Frame = 2
Query:  110 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFR-FL*EVSMTGLILNGR 724
            PDHLFNLRN+FYLGAYQAAINNS++ NL  +D VERDCLV+R+YIALGSYQLVISEIDE+AATPLQAVKLLA+YLSSP+NKESTISSL+EWL+DP +G+N  +RLIAG +FMHEEDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLNLAV   + ++    F+ F  +  MT LILNG+
Sbjct:    7 PDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGK 212          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.267e-76
Identity = 148/206 (71.84%), Postives = 172/206 (83.50%), Query Frame = 2
Query:  110 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFR-FL*EVSMTGLILNGR 724
            PD LFNLRN FYLGAYQAAINNSD+  L  D A ERD +V+RSY+ALGSYQLVISEID SAAT LQAVKLLALYLS   +KES I SLKEWLSD A+GSN  LRLIAGI+FMHE+DY EALKHT++GGT++LHALNVQIF+KMHRSDYAE+QL+ MQQIDEDHTLTQLANAWL++AV   + R+    F+ F  +  MTG++LNG+
Sbjct:    4 PDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTGMVLNGK 207          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 127/211 (60.19%), Postives = 151/211 (71.56%), Query Frame = 2
Query:  110 PDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGR 724
            PDHLF LRN+FY+GAYQA I           L PD   ERD L+YRSYIA+GS+QLVI EI   AATPLQAV+LL +YLS     KES I  L E L+D A+GSN  LRL+AG V MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +   + ++    F+ L E    T LILNG+
Sbjct:    7 PDHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGK 217          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.124e-59
Identity = 127/211 (60.19%), Postives = 151/211 (71.56%), Query Frame = 2
Query:  110 PDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGR 724
            PDHLF LR +FY+GAYQA I           L PD   ERD L+YRSYIA+GS+QLVI EI   AATPLQAV+LLA+YLS     KES I  L E L+D A+GSN  LRL+AG V MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +   + ++    F+ L E    T LILNG+
Sbjct:    7 PDHLFGLRYSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGK 217          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.567e-34
Identity = 85/211 (40.28%), Postives = 131/211 (62.09%), Query Frame = 2
Query:  113 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAAC 739
            D LF+++N FY+G+YQ  IN +    L  PD  VERD  +YR+YIA   Y +V+ EI  S+A  LQAV++ A YL++ + +++ +  L   +S     +N T  L+A  V+ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAV   + ++    F+ L +  S T L+LNG+  AAC
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQ--AAC 225          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.491e-34
Identity = 84/211 (39.81%), Postives = 130/211 (61.61%), Query Frame = 2
Query:  113 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAAC 739
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   Y +V+ EI  S+A  LQAV++ A YL+S + ++S +  L   +S     +N T  L+A  ++ H+++ + AL+  + G  +E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAV   + ++    F+ L +  S T L+LNG+  AAC
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQ--AAC 225          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_CHICK (Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34
Identity = 81/211 (38.39%), Postives = 134/211 (63.51%), Query Frame = 2
Query:  113 DHLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAAC 739
            D LF+++N+FY+GAYQAAIN +  +    P+   ERD  ++RSYIA   Y +V+ EI  +A+  LQAV++ A YLS+   +++ ++ L + ++     +N T  L+A  ++ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+   + +     F+ + +  S T L+LNG+  AAC
Sbjct:   17 DELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQ--AAC 225          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33
Identity = 80/211 (37.91%), Postives = 130/211 (61.61%), Query Frame = 2
Query:  113 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAAC 739
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  +++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA    + +     F+ + +  S T L+LNG+  AAC
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPETDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQ--AAC 225          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33
Identity = 80/211 (37.91%), Postives = 130/211 (61.61%), Query Frame = 2
Query:  113 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAAC 739
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  +++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA    + +     F+ + +  S T L+LNG+  AAC
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQ--AAC 225          
The following BLAST results are available for this feature:
BLAST of FC875549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE2_ARATH1.144e-8577.18Coatomer subunit epsilon-2 OS=Arabidopsis thaliana... [more]
COPE1_ARATH3.327e-8575.24Coatomer subunit epsilon-1 OS=Arabidopsis thaliana... [more]
COPE1_ORYSJ1.267e-7671.84Coatomer subunit epsilon-1 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSJ3.136e-5960.19Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSI9.124e-5960.19Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE_CRIGR1.567e-3440.28Coatomer subunit epsilon OS=Cricetulus griseus GN=... [more]
COPE_MOUSE3.491e-3439.81Coatomer subunit epsilon OS=Mus musculus GN=Cope P... [more]
COPE_CHICK4.560e-3438.39Coatomer subunit epsilon OS=Gallus gallus GN=COPE ... [more]
COPE_PONAB5.042e-3337.91Coatomer subunit epsilon OS=Pongo abelii GN=COPE P... [more]
COPE_HUMAN6.585e-3337.91Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]

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Properties
Property NameValue
Genbank descriptionC31405B06EF CTVClemen1 Citrus clementina cDNA clone C31405B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875549 ID=FC875549; Name=FC875549; organism=Citrus clementina; type=EST; length=741bp
GAAAAGGTTTCAGTCTGCGCGTTGGAGTTGAAGAAGGGATCCAATCTAAA
TCAAAGAAGCAATCGATCAAGAAGCGAAAAAGGAATAAAGAATGGCAGCG
GCAGCAGCACCAGATCACTTGTTCAATCTGAGAAACAACTTCTACTTGGG
GGCGTATCAGGCCGCTATCAACAACAGCGACCTCACCAATCTTCCACCAG
ACGACGCCGTTGAGCGTGACTGCCTCGTCTACCGCTCTTACATTGCCCTT
GGCAGTTACCAGCTTGTGATCAGTGAGATCGATGAGTCGGCTGCTACTCC
TCTCCAAGCCGTGAAGTTGCTTGCTCTCTATCTCTCTAGCCCTGACAACA
AGGAATCAACAATTTCAAGTTTAAAAGAGTGGTTGTCAGATCCAGCCATT
GGGAGCAATGTGACATTACGCTTGATTGCTGGTATCGTATTCATGCATGA
AGAGGATTATAATGAGGCACTCAAACACACCAATGCTGGAGGGACCATGG
AATTACATGCATTGAATGTCCAAATATTCCTTAAGATGCACAGGTCTGAC
TATGCAGAGAGACAGCTGAGGGCCATGCAACAGATTGATGAGGACCACAC
CCTAACTCAACTCGCAAATGCTTGGTTGAATTTGGCAGTGGTGGTTCCCA
GATACAGGAAGCATATCTCATCTTTCAGATTTCTCTGAGAAGTATCCATG
ACAGGGTTGATCTTGAATGGAAGGCTGTTTGCTGCATGCAT
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