FC875552

Overview
NameFC875552
Unique NameFC875552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 5.702e-100
Identity = 179/214 (83.64%), Postives = 194/214 (90.65%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            MAF KAQK+KAYFKR+QVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDI AQI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGEDYSVEPADTRRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAG++K+G+QLD EVHRKYI+GGHVAAYM TLMEDE
Sbjct:    1 MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDE 214          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 351.288 bits (900), Expect = 2.928e-96
Identity = 172/214 (80.37%), Postives = 187/214 (87.38%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK+ KS AYFKR+QVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF K+ KQLDAE+HR YIYGGHV+ YM  L EDE
Sbjct:    1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDE 214          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 350.903 bits (899), Expect = 3.825e-96
Identity = 172/214 (80.37%), Postives = 187/214 (87.38%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK+ KS AYFKR+QVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF K+ KQLDAE+HR YIYGGHV+ YM  L EDE
Sbjct:    1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDE 214          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 3.958e-93
Identity = 166/212 (78.30%), Postives = 182/212 (85.85%), Query Frame = 3
Query:   66 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            FVK QK+ AY+KRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+E
Sbjct:    4 FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEE 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.152e-92
Identity = 166/212 (78.30%), Postives = 181/212 (85.38%), Query Frame = 3
Query:   66 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            FVK QK+ AY KRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+E
Sbjct:    4 FVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEE 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.033e-89
Identity = 164/212 (77.36%), Postives = 178/212 (83.96%), Query Frame = 3
Query:   66 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            FVK QK+ AYFKRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEGNVEATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+E
Sbjct:    7 FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEE 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.729e-72
Identity = 135/215 (62.79%), Postives = 162/215 (75.35%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVE-PADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QVK++RRREGKTDYRAR RL+ QDKNKYNTPKYR V+RFTN DII QI+ A I GD VL +AYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L + D+Y G  +  GED++VE   D  RPFRA LDVGL +TTTGNRVF            IPHS  RF G+ ++  QL+A+  R+YI+GGHV+ YM  L E++
Sbjct:    1 MPFVKVIKNKAYFKRYQVKFRRRREGKTDYRARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_HUMAN (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 262.692 bits (670), Expect = 1.370e-69
Identity = 131/215 (60.93%), Postives = 158/215 (73.49%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 262.307 bits (669), Expect = 1.789e-69
Identity = 130/215 (60.47%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QVKYKRRR+GKTDY AR RL+ QDKNKYNTPKYR +VRFTNKDI+ QI  A I GD V+ AAYAHELPRYG++VGLTNYAAAYCTGLLL+RR+L    +D+ YEG  E  G+++ VE  D +   FRA LDVGL +TTTG +VF            IPHS KRF G+  +     AEVHR +I+GGHV+ YM  L E++
Sbjct:    1 MGFVKVVKNKAYFKRYQVKYKRRRQGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAHELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGAFRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.789e-69
Identity = 130/215 (60.47%), Postives = 158/215 (73.49%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEED 215          
The following BLAST results are available for this feature:
BLAST of FC875552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL5_CUCSA5.702e-10083.6460S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH2.928e-9680.3760S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH3.825e-9680.3760S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSI3.958e-9378.3060S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ1.152e-9278.3060S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ2.033e-8977.3660S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SUBDO1.729e-7262.7960S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_HUMAN1.370e-6960.9360S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
RL5_STYCL1.789e-6960.4760S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]
RL5_CHICK1.789e-6960.4760S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]

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Properties
Property NameValue
Genbank descriptionC31405B10EF CTVClemen1 Citrus clementina cDNA clone C31405B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875552 ID=FC875552; Name=FC875552; organism=Citrus clementina; type=EST; length=702bp
GACTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCTCTTACAATTCGAAA
GTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAA
GCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACA
GAGCTAGAATTCGCCTGATTAATCAGGACAAGAATAAGTACAACACACCC
AAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGAT
AGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCC
ATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCA
GCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGA
AATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACT
CTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTT
GGGCTCATCAAAACAACAACTGGAAACCGTGTGTTTGGTGCTCTGAAGGG
AGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCTG
GTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTAT
ATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATGA
GC
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