FC875567

Overview
NameFC875567
Unique NameFC875567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10264 contig Ccv1_Contig10264:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875567 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.319e-67
Identity = 129/207 (62.32%), Postives = 154/207 (74.40%), Query Frame = 1
Query:   94 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRGVXXXXXXXXXXRGLVACGTGVGVAIFANKNPGVFAATCLTPADALNARSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENLSCFLDKSMIEMPLIGKNDKLDN-----DSSTSTCSICCLVKNRELNPVEMIPGWIMKIXRESP 699
            PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGR V          RGLV CGTGVGVA+FANK PGV+AATCL+  DA+NARSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+PCPASG +PW   +S FLD S+ EM  IGK+   D+     D +T++C ICCL KNRE  PV+++PG  MKI RE+P
Sbjct:   11 PLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETP 215          
BLAST of FC875567 vs. ExPASy Swiss-Prot
Match: RPIB_ECOLI (Ribose-5-phosphate isomerase B OS=Escherichia coli (strain K12) GN=rpiB PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 1
Query:  100 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRGVXXXXXXXXXXRGLVACGTGVGVAIFANKNPGVFAATCLTPADALNARSINNCNVLAVSGMSTSKESAVEILDTWLKTPFK 480
            KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V           G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A  I+D WL   ++
Sbjct:    3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG----GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLGAQYE 130          
The following BLAST results are available for this feature:
BLAST of FC875567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DR102_ARATH1.319e-6762.32DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
RPIB_ECOLI1.027e-1134.85Ribose-5-phosphate isomerase B OS=Escherichia coli... [more]
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Properties
Property NameValue
Genbank descriptionC31405D02EF CTVClemen1 Citrus clementina cDNA clone C31405D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875567 ID=FC875567; Name=FC875567; organism=Citrus clementina; type=EST; length=716bp
GGTAGACTTACTGACTCTCCACTGAACTCATCCCTCGGAATAGTCAACTC
GTAGTGAACCATGGCTGAAAACGCCGCCGCTGCCGCTCCCAGCCCTCTCA
AGATCATCGCAGGCGCCGACTCCTTCGGCGCCGAATTGAAAGACGCTCTG
GTCTCCCACCTCCGGTCACTCAACATAGACGTGGAAGATCTCGGCACCTC
CGATTACTACTCCATCGGCGCCGAGGTCGGCCGCGGCGTCTCCTCCTCCG
ATTCCTCCGACACCACCACACGTGGCCTCGTCGCCTGCGGAACCGGAGTC
GGCGTCGCAATCTTCGCCAACAAAAACCCCGGCGTCTTCGCCGCCACGTG
TCTCACTCCCGCCGACGCCCTGAACGCCCGCTCCATCAACAACTGCAACG
TCCTCGCCGTCTCAGGTATGTCCACTTCCAAAGAATCCGCCGTCGAAATC
CTCGACACGTGGCTTAAAACCCCTTTTAAGGCCCCATGCCCCGCGTCGGG
TTTTAAGCCATGGGAAGAGAACTTGTCGTGTTTTCTCGACAAGTCAATGA
TCGAAATGCCCCTGATTGGTAAAAATGATAAATTAGATAATGATTCTAGT
ACCAGTACTTGTAGCATATGTTGCTTAGTTAAGAACAGGGAATTGAATCC
TGTGGAAATGATTCCCGGGTGGATCATGAAGATTGNTAGGGAGAGTCCAC
GTCGGCCATTGTGAGG
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