FC875572

Overview
NameFC875572
Unique NameFC875572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875572_ssr41 microsatellite FC875572_ssr41:41..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10831 contig Ccv1_Contig10831:58..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 7.048e-52
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 2
Query:  173 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPG 508
            M+IQCNVCEAAEA VLCCADEAALCW CD+K+HAANKLA KHQRVPLS+S++ +PKCDICQE SGFFFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KV LE  D G
Sbjct:    1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTG 112          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.991e-38
Identity = 72/106 (67.92%), Postives = 88/106 (83.02%), Query Frame = 2
Query:  173 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL 490
            M+IQC+VCE A A V+CCADEAALC +CD ++HAANKLASKHQR+ L+S ST+ P+CDICQE + F FC++DRALLCR CD +IH ANS  + HQRFL TG+KVAL
Sbjct:    1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.514e-35
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 2
Query:  173 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL 490
            M+IQC+VCE A A ++CCADEAALC +CD +VHAANKLASKHQR+ L S ST+ P CDIC E + F FC++DRALLCR CD A H  N+  + HQRFL TG++VAL
Sbjct:    1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL 106          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 62/108 (57.41%), Postives = 76/108 (70.37%), Query Frame = 2
Query:  173 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVA 487
            M+I+C+VC+  EA V C ADEA+LC  CD +VH ANKLASKH R  L   SSS+T  P CDICQ+     FC QDRA+LC+ CD +IH AN +   H RFLLTGVK++
Sbjct:    1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLS 108          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 41/92 (44.57%), Postives = 50/92 (54.35%), Query Frame = 2
Query:  185 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 460
            C+ C +A   V C AD A LC  CD +VHAAN+LAS+H+RV +         C  C+     FFC  D A LC  CD  IH+AN     HQR
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  185 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPA 499
            C+ C++  A + C AD A LC +CD K+H ANKLAS+H+RV L         C++C++      C  D A LC  CD  IH+AN     H+R  +T    A+ PA
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA 103          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 39/92 (42.39%), Postives = 49/92 (53.26%), Query Frame = 2
Query:  185 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 460
            C+ C +A   V C AD A LC  CD +VHAAN++AS+H+RV +         C  C+     F C  D A LC  CD  IH+AN     HQR
Sbjct:   16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  185 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLT 472
            C+ C++A A + C  D A LC  CD KVHAANKLAS+H RV +         C++C++      C  D A LC  CD  IH+AN     H+R  +T
Sbjct:    6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 2
Query:  185 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 460
            C+ C +    V C AD A LC  CD +VH+AN++AS+H+RV +         C+ C+     F C  D A LC  CD  +H+AN     HQR
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102          
BLAST of FC875572 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  185 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF 463
            C+ C+++ A V C AD A LC  CD +VH AN+L +KH R  L         CD C E+    FC  +R++LC+ CD   HTA+S + + + F
Sbjct:   13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL---------CDSCNESPSSLFCETERSVLCQNCDWQHHTASSSLHSRRPF 96          
The following BLAST results are available for this feature:
BLAST of FC875572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
STHY_ARATH7.048e-5282.14Probable salt tolerance-like protein At1g78600 OS=... [more]
STO_ARATH1.991e-3867.92Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STH_ARATH3.514e-3564.15Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STHX_ARATH1.995e-3057.41Probable salt tolerance-like protein At1g75540 OS=... [more]
COL1_ARATH6.232e-1644.57Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL3_ARATH8.139e-1640.00Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL2_ARATH4.039e-1542.39Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL4_ARATH6.890e-1541.67Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
CONS_ARATH7.618e-1439.13Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL13_ARATH4.938e-1339.78Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC31405D08EF CTVClemen1 Citrus clementina cDNA clone C31405D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875572 ID=FC875572; Name=FC875572; organism=Citrus clementina; type=EST; length=677bp
CCTTCTCAGCCTCACAAAAATATCCCATTTCCGTTTCATTTTATTATTAT
TATTAGTTTTTACGTCTCTCCCTCCATCTCACTCACCAACTGTTTCGCCA
AAATCCTTTTACAAAATTAAAAAACGACGTCGTTTCGATTCTTTTGTGGT
CTCGCGGTTTACACAGAGAGAGATGAGGATACAGTGCAACGTATGCGAGG
CGGCGGAGGCGAAGGTGCTGTGCTGCGCCGACGAGGCGGCGCTGTGCTGG
GAGTGCGACGACAAAGTTCACGCCGCCAATAAGCTAGCGAGCAAGCACCA
GAGAGTCCCTCTCTCCTCTTCTTCGACACAAATGCCCAAGTGTGATATCT
GTCAGGAAACATCTGGCTTTTTCTTTTGTCTACAAGATCGAGCCTTACTC
TGCAGGAAATGTGATGTTGCCATACACACAGCGAATAGCTATGTGTCTGC
TCATCAGAGATTTTTGCTTACTGGAGTAAAAGTAGCTCTTGAACCAGCTG
ATCCTGGTGCTTCATCTTCCTCTATTAAGTCACTATCTGGGGAAAACATT
TTGGACACGAAATCCCATTCCCTGTCTAGAAGGGACGCCCTGATGCCAGT
GGCTGCTGAATGCAAAGAAGTTTTACCTGGCAGTTCTGGTGGAGTTGGCG
GCTTTGCAATGAACAAGTCTCATTTGC
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