FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.112e-110
Identity = 189/222 (85.14%), Postives = 209/222 (94.14%), Query Frame = 3
Query:    3 KSEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            K++DG L CGY SFRGKR+TMEDFYDIK S ++GQAVCMFG+FDGHGGSRAAEYLKEHLF NL+KHPQF+TDTKLA++ETY+QTDV FLESE+DTYRDDGSTAS A+LVGNHLYVANVGDSRT++SKAGKAI LS+DHKPNR DERKRIE+AGGV+MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLE+D   ELLVLASDGLWDVVPNEDAVALA+
Sbjct:   94 KNDDGSLSCGYCSFRGKRSTMEDFYDIKASTIEGQAVCMFGIFDGHGGSRAAEYLKEHLFNNLMKHPQFLTDTKLALNETYKQTDVAFLESEKDTYRDDGSTASAAVLVGNHLYVANVGDSRTIVSKAGKAIALSDDHKPNRSDERKRIESAGGVIMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQ 315          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 2.032e-104
Identity = 180/222 (81.08%), Postives = 205/222 (92.34%), Query Frame = 3
Query:    3 KSEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            KSEDG L CGYSSFRGKRA+MEDFYDIK+S +D + + +FG+FDGHGGSRAAEYLKEHLFENL+KHP+FMT+TKLAISETY++TD +FL+SE  T+RDDGSTASTA+LVGNHLYVANVGDSR VISKAGKAI LSEDHKPNR DERKRIE+AGGVVMWAGTWRVGGVLAMSRAFGNR+LKQFVVA+PEIQ+ E+D+  E L+LASDGLWDVVPNEDAV+L +
Sbjct:  222 KSEDGFLSCGYSSFRGKRASMEDFYDIKSSKIDDKQISLFGIFDGHGGSRAAEYLKEHLFENLMKHPEFMTNTKLAISETYKKTDSEFLDSESHTHRDDGSTASTAVLVGNHLYVANVGDSRAVISKAGKAIALSEDHKPNRSDERKRIESAGGVVMWAGTWRVGGVLAMSRAFGNRLLKQFVVADPEIQEQEIDDELEFLILASDGLWDVVPNEDAVSLVK 443          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 1.720e-103
Identity = 181/220 (82.27%), Postives = 202/220 (91.82%), Query Frame = 3
Query:    9 EDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            EDGKL+CGYSSFRGKRATMEDFYD+K + +DGQAV +FGVFDGHGG RAAEYLKE+LFENLLKHP+F+TDTKLAISETYQ+TD DFLESE + +RDDGSTASTA+LVG HLYVANVGDSR V+SKAGKA+ LSEDHKPNR DERKRIENAGGVV+WAGTWRVGGVLAMSRAFGNR+LK FVVAEPEIQ+  V+E  E LVLASDGLWDVV NE+AV+LA+
Sbjct:  106 EDGKLKCGYSSFRGKRATMEDFYDVKLTEIDGQAVSLFGVFDGHGGPRAAEYLKENLFENLLKHPEFLTDTKLAISETYQKTDTDFLESESNAFRDDGSTASTAVLVGGHLYVANVGDSRAVVSKAGKAMALSEDHKPNRSDERKRIENAGGVVIWAGTWRVGGVLAMSRAFGNRLLKPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAK 325          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 349.747 bits (896), Expect = 7.739e-96
Identity = 166/221 (75.11%), Postives = 193/221 (87.33%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            S+DG++ CGYSSFRG+RA MEDFYDIK+S VD   + +FG+FDGHGGS AAE+LK+HLFENLLKHP F+TDTK AISETY++TD DFL++E +  R+DGSTASTAI VGNH+YVANVGDSRTV+SKAGKAI LS DHKPNR DERKRIENAGGVV W+GTWRVGGVLAMSRAFGNR LK+FVVAEPE+Q+ E+D+  E L+LASDGLWDVV NE AVA  +
Sbjct:  109 SDDGRMSCGYSSFRGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFENLLKHPSFITDTKSAISETYRKTDSDFLDAETNINREDGSTASTAIFVGNHIYVANVGDSRTVMSKAGKAIALSSDHKPNRKDERKRIENAGGVVTWSGTWRVGGVLAMSRAFGNRFLKRFVVAEPEVQEQEIDDDLEFLILASDGLWDVVSNEHAVAFVK 329          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C55_ORYSJ (Probable protein phosphatase 2C 55 OS=Oryza sativa subsp. japonica GN=Os06g0526700 PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 7.514e-83
Identity = 149/222 (67.12%), Postives = 185/222 (83.33%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLES-ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            S+DGKL  GYSSF+G+R +MED   IK++ V+G+ V +FGVFDGHGG RAAEYLK+HLF+NL+KHP+F+ DTKLAI++T+ +TD DFL+S   D YRDDGSTA  AIL+GN LYVANVGDSR V  KAGKA+PLSEDHKPN+ DERKRIE+AGG+V+    WRV G+LA+SRAFGNR++K++V AEP IQ+  VDEG E LVLA+DGLWDV+ NEDAV+L +
Sbjct:  116 SKDGKLSWGYSSFQGRRPSMEDRLSIKSTTVNGETVSLFGVFDGHGGPRAAEYLKKHLFKNLVKHPKFLKDTKLAINQTFLKTDADFLQSISSDRYRDDGSTAVAAILIGNRLYVANVGDSRAVALKAGKAVPLSEDHKPNKKDERKRIEDAGGIVVSDDIWRVDGILAVSRAFGNRLMKRYVKAEPNIQEKVVDEGLEYLVLATDGLWDVMRNEDAVSLLK 337          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 9.813e-83
Identity = 150/222 (67.57%), Postives = 182/222 (81.98%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLES-ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            SEDG+L   YSSF+G+R +MED + IK + ++ Q V +FGVFDGHGGS AAEYLKEHLFENL+ HP+ + DTKLAIS+T+ +TD DFLES   + +RDDGSTA TAILVGNHLYV NVGDSR V  KAGKA+PLSEDHKPNR DE+KRIE+AGG+V++  TWRV G+LAMSRAFGNR LK +V AEP+IQ+  VDE  E L+LA+DGLWDV+ NEDAV+L +
Sbjct:   90 SEDGRLSWDYSSFKGRRPSMEDRFSIKMTTINEQTVSLFGVFDGHGGSLAAEYLKEHLFENLVNHPELLRDTKLAISQTFLKTDADFLESVSSNPFRDDGSTAVTAILVGNHLYVGNVGDSRVVALKAGKAVPLSEDHKPNRKDEQKRIEDAGGIVVFDDTWRVNGLLAMSRAFGNRALKHYVKAEPDIQEKVVDESLEYLILATDGLWDVMRNEDAVSLLK 311          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.953e-80
Identity = 141/221 (63.80%), Postives = 180/221 (81.45%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            SE+GK   GY+S  GKRA+MEDFY+ +   VDG+ + +FGVFDGHGG+RAAEY+K+HLF NL+KHP+F++D K AI+ETY  TD +FL++E    RD GSTASTAILVG+ L VANVGDSR V+ + G AI +S DHKP++ DER+RIE+AGG VMWAGTWRVGGVLA+SRAFG+++LKQ+VVA+PEI++  VD   E L+LASDGLWDVV N++AV + R
Sbjct:   76 SENGKFSYGYASAPGKRASMEDFYETRIDGVDGETIGLFGVFDGHGGARAAEYVKQHLFSNLIKHPKFISDIKSAIAETYNHTDSEFLKAESSHTRDAGSTASTAILVGDRLLVANVGDSRAVVCRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVR 296          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.015e-79
Identity = 140/221 (63.35%), Postives = 180/221 (81.45%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            S++GK   GY+S  GKR++MEDF++ +   ++G+ V +FGVFDGHGG+RAAEY+K HLF NL+ HP+F++DTK AI++ Y  TD + L+SE    RD GSTASTAILVG+ L VANVGDSR VIS+ GKAI +S DHKP++ DER+RIENAGG VMWAGTWRVGGVLA+SRAFG+R+LKQ+VVA+PEIQ+ ++D+  E L+LASDGLWDV  NE AVA+ +
Sbjct:   27 SQNGKFSYGYASSAGKRSSMEDFFETRIDGINGEIVGLFGVFDGHGGARAAEYVKRHLFSNLITHPKFISDTKSAITDAYNHTDSELLKSENSHNRDAGSTASTAILVGDRLVVANVGDSRAVISRGGKAIAVSRDHKPDQSDERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDDTLEFLILASDGLWDVFSNEAAVAMVK 247          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.015e-79
Identity = 140/221 (63.35%), Postives = 181/221 (81.90%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            S++GK   GY+S  GKR++MEDFY+ +   V+G+ V +FGVFDGHGG+RAAEY+K++LF NL++HP+F++DT  AI++ Y QTD +FL+SE    RD GSTASTAILVG+ L VANVGDSR VI + G AI +S DHKP++ DER+RIE+AGG VMWAGTWRVGGVLA+SRAFG+R+LKQ+VVA+PEIQ+ +VD   E L+LASDGLWDVV NE+AV + +
Sbjct:   27 SQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIRHPKFISDTTAAIADAYNQTDSEFLKSENSQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIK 247          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.732e-79
Identity = 139/221 (62.90%), Postives = 178/221 (80.54%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            S++GK   GY+S  GKR++MEDF++ +   +DG+ V +FGVFDGHGGSRAAEY+K HLF NL+ HP+F++DTK AI++ Y  TD + L+SE    RD GSTASTAILVG+ L VANVGDSR VI + G A  +S DHKP++ DER+RIENAGG VMWAGTWRVGGVLA+SRAFG+R+LKQ+VVA+PEIQ+ ++D+  E L+LASDGLWDV  NE+AVA+ +
Sbjct:   27 SQNGKFSYGYASSAGKRSSMEDFFETRIDGIDGEIVGLFGVFDGHGGSRAAEYVKRHLFSNLITHPKFISDTKSAIADAYTHTDSELLKSENSHTRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAFAVSRDHKPDQSDERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDDSLEFLILASDGLWDVFSNEEAVAVVK 247          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
P2C76_ARATH1.112e-11085.14Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C52_ORYSJ2.032e-10481.08Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C13_ORYSJ1.720e-10382.27Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C07_ORYSJ7.739e-9675.11Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
P2C55_ORYSJ7.514e-8367.12Probable protein phosphatase 2C 55 OS=Oryza sativa... [more]
P2C56_ORYSJ9.813e-8367.57Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
P2C10_ORYSJ5.953e-8063.80Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C69_ARATH1.015e-7963.35Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C59_ARATH1.015e-7963.35Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C71_ARATH1.732e-7962.90Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
back to top