FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.414e-84
Identity = 146/161 (90.68%), Postives = 155/161 (96.27%), Query Frame = 2
Query:  206 MATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKF 688
            MA+NENLPPNVIKQLAKELKSLDESPP+GIKV VND+DFS I ADIEGP GTPYENG+FRMKL LSHDFPHSPPKGYF+TKIFHPN+A+NGEICVNTLKKDWNPSLGLRHVL VVRCLLIEPFPESALNEQAGKMLLENY+EYARHAR+YTGIHAKPKPKF
Sbjct:    1 MASNENLPPNVIKQLAKELKSLDESPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHARLYTGIHAKPKPKF 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.647e-57
Identity = 98/152 (64.47%), Postives = 124/152 (81.58%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 673
            ENLPP++I+Q+ KE+ +L   PPEGIK+  N++D + +  +IEGP GTPY  G+FRMKL+L  DFP +PPKGYFLTKIFHPN++TNGEICVN LKKDW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IHA+
Sbjct:    6 ENLPPHIIRQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQ 157          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.766e-56
Identity = 99/153 (64.71%), Postives = 126/153 (82.35%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ KEL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  GVFR+KL LS DFP +PPK YFLTKIFHPN+A+NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.306e-56
Identity = 98/151 (64.90%), Postives = 122/151 (80.79%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            ENLPP+VI+Q+ KE+ +L   PPEGIK+  N++D + +   IEGP GTPY  G+FRMKL+L  DFP +PPKGYFLTKIFHPN+++NGEICVN LKKDW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IHA
Sbjct:    6 ENLPPHVIRQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.306e-56
Identity = 98/153 (64.05%), Postives = 126/153 (82.35%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ KEL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL LS DFP +PPK YFLTKIFHPN+A+NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.934e-56
Identity = 98/153 (64.05%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ KEL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL LS DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.138e-56
Identity = 98/153 (64.05%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  GVFR+KL LS DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMENTPPEGIKVLINESDVTDIQALIDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.710e-56
Identity = 97/152 (63.82%), Postives = 123/152 (80.92%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 673
            EN  P +IKQ+A+E+  L   PPEGIKV  ND+D + I A IEGP GTPYE G+F++KL+L  DFP +PPKG+FLTKIFHPN+A NGEICVNTLKKDW P LG++ VL+ V+CLLI P PESALNE+AGK+LLE Y++Y++ A+++T IHAK
Sbjct:    9 ENFSPQIIKQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHAK 160          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.710e-56
Identity = 96/152 (63.16%), Postives = 123/152 (80.92%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 673
            ENLPP++I+++ KE+ +L   PPEGIK+  N++D + +  +IEGP GTPY  G+FRMKL+L  DFP +PPKGYFLTKIFHPN++ NGEICVN LKKDW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IHA+
Sbjct:    6 ENLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQ 157          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.145e-55
Identity = 97/153 (63.40%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  GVFR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UBC22_ARATH3.414e-8490.68Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]
UBE2S_XENTR4.647e-5764.47Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2S_DROVI1.766e-5664.71Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBE2S_RANCA2.306e-5664.90Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2S_DROGR2.306e-5664.05Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBE2S_DROMO3.934e-5664.05Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBE2S_DROWI5.138e-5664.05Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBE2S_NEMVE6.710e-5663.82Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UB2SB_XENLA6.710e-5663.16Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_DROYA1.145e-5563.40Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
back to top