FC875634

Overview
NameFC875634
Unique NameFC875634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13228 contig Ccv1_Contig13228:909..1675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875634 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.518e-27
Identity = 86/195 (44.10%), Postives = 106/195 (54.36%), Query Frame = 1
Query:  145 RGRKNDQREDSDYLEQGRRSKLSAVSLAVSDVKLERFDEVLLRHCETKKDXXXXXXXXXXXXNGSSRKLQQNGQXXXXXXXXXXXXXXXXXXXEVVDLRGLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPMHTHISCRTSAADILKAYQMSLSAWPFIRMSYHFANQTI 729
            R R  D  ED D LE GR+SKL A+S    D   E+F+EVLL  C+ K D             GSS + +Q                      + VD+R LL  CAQAVAS DQR A E+LK+IR HSS  GD TQRL ++FA+ALEAR+ G  T   +  S RTS  DILKAY+  + A P + M Y  AN+TI
Sbjct:  135 RYRHRDDDEDDD-LESGRKSKLPAISTV--DELAEKFEEVLLV-CQ-KNDQGEATEKKTRHVKGSSNRYKQQKSD------------------QPVDMRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTI 306          
BLAST of FC875634 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 85/209 (40.67%), Postives = 117/209 (55.98%), Query Frame = 1
Query:  124 HHSSYGS-----RGRKNDQR-EDSDYLEQGRRSKLSAVSLAVSDVKLERFDEVLLRHCETKKDXXXXXXXXXXXXNGSSRKLQQNGQXXXXXXXXXXXXXXXXXXXEVVDLRGLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPMHTHISC-RTSAADILKAYQMSLSAWPFIRMSYHFANQTI 729
            HH SY        G+K+  R ED D++E+ R +K SAV +  S++  E FD++L+  C   K             +      Q NG                    E  DLR LL LCAQAV+ +D+RTANE L+QIR HSS  G+G++RLAHYFA++LEARL G  T ++T +S  +TSAAD+LKAYQ  +S  PF + +  FAN ++
Sbjct:  289 HHHSYAPPPNRLTGKKSHWRDEDEDFVEE-RSNKQSAVYVEESELS-EMFDKILV--CGPGKPVCILNQNFPTE-SAKVVTAQSNGAKIRGKKSTSTSHSNDSKK-ETADLRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTSAADMLKAYQTYMSVCPFKKAAIIFANHSM 491          
BLAST of FC875634 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 83/245 (33.88%), Postives = 133/245 (54.29%), Query Frame = 1
Query:    1 VPNLHGEIESLLK-REGVNFAPKVSLPKHGEGVLLSSADDGRHHSSYGSRGRKNDQREDSDYLEQGRRSKLSAVSLAVSDVKLERFDEVLLRHCETKKDXXXXXXXXXXXXNGSSRKLQQNGQXXXXXXXXXXXXXXXXXXXEVVDLRGLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPMHTHISC-RTSAADILKAYQMSLSAWPFIRMSYHFANQTI 729
            V N+  + +  L+ ++G+  A K  LPK  + V+ +S  +          G+K+  RE+ ++L + R  K SA+ +  +D   + FD +L+   E K+                +    ++ +                   E  DLR +L  CAQAV+ ND+RTA+E L +IR+HSS++GDGT+RLAHYFA++LEARL G  T ++T +S  +TS +D+LKAYQ  +S  PF +++  FAN +I
Sbjct:  188 VSNMFNDTDLALQFKKGMEEASKF-LPKSSQLVIDNSVPNRL-------TGKKSHWREE-EHLTEERSKKQSAIYVDETDELTDMFDNILI-FGEAKEQPVCILNESFPKEPAKASTFSKSPKGEKPEASGNSYTK------ETPDLRTMLVSCAQAVSINDRRTADELLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTSTSDMLKAYQTYISVCPFKKIAIIFANHSI 416          
BLAST of FC875634 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 87/226 (38.50%), Postives = 116/226 (51.33%), Query Frame = 1
Query:  142 SRGRKNDQREDSDYLEQGRRSKLSAV---SLAVSDV------------KLERFD---EVLLRHCETKKDXXXXXXXXXXXXNGSSRKLQQNGQXXXXXXXXXXXXXXXXXXXEVVDLRGLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPMHTHI-SCRTSAADILKAYQMSLSAWPFIRMSYHFANQTIK----N*QRKH 750
            S+ RKN  R D   +E+ R SKL AV    +  SDV             ++ F+   +VL +  E KK              G  R+ +  G+                   EVVDLR LL  CAQAVA++D+R A + LKQIR HS+ FGDG QRLAH FA+ LEARL G  + ++  I S   SAA +LKA+Q+ L+  PF ++SY   N+TI+    N QR H
Sbjct:  243 SKARKNSSR-DEICVEEERSSKLPAVFGEDILRSDVVDKILVHVPGGESMKEFNALRDVLKKGVEKKK---------ASDAQGGKRRARGRGRGRGRGGGGGQNGKK-----EVVDLRSLLIHCAQAVAADDRRCAGQLLKQIRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRSAAAVLKAHQLFLACCPFRKLSYFITNKTIRDLVGNSQRVH 453          
BLAST of FC875634 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.507e-22
Identity = 82/205 (40.00%), Postives = 113/205 (55.12%), Query Frame = 1
Query:  142 SRGRKN--DQREDSDYLEQGRR-SKLSAVSLAVSDVKL-ERFDEVLLRHCETKKDXXXXXXXXXXXXNGSSRKLQQNGQXXXXXXXXXXXXXXXXXXXEVVDLRGLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPM-----HTHISCRTSAADILKAYQMSLSAWPFIRMSYHFANQTI 729
            S+ RKN  ++ E+ D LE+ RR SK  AV+    D KL E FD+VLL       D            NGSS+ L + G+                     VD R LLTLCAQ+V++ D+ TA++ L+QIR+  S  GD +QRLAH+FA+ALEARL G+   M      +  S + +AA ILK+Y + LSA PF+ + Y F+N+ I
Sbjct:  202 SKTRKNHHEREEEEDDLEEARRRSKQFAVN--EEDGKLTEMFDKVLLL------DGECDPQIIEDGENGSSKALVKKGRAKKKS--------------RAVDFRTLLTLCAQSVSAGDKITADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTGTMIQSYYDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMI 384          
BLAST of FC875634 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22
Identity = 81/220 (36.82%), Postives = 107/220 (48.64%), Query Frame = 1
Query:  103 SSADDGRHHSSYGSRGRKNDQREDS-DYLEQGRRSKLSAVSLAVSDVKLERFDEVLLRHCETKKDXXXXXXXXXXXXN--------GSSRKLQQNGQXXXXXXXXXXXXXXXXXXXEVVDLRGLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTP--MHTHISCRTSAADILKAYQMSLSAWPFIRMSYHFANQTI 729
            S+  D     S G   RK   R D  D LE  RR+K  A+ ++  +    + + VLL  C+T ++                     GSS K + +                       VDLR LLT CAQAVAS DQR A ++LK+IR HSS+ GDGTQRLA YFA+ALEAR+ G  +P   +   S  TS  DILKAY++ +   P     Y  AN++I
Sbjct:  124 STTTDSSALVSSGESQRKYRHRNDEEDDLENNRRNKQPAIFVSEMEELAVKLEHVLLV-CKTNQEEEEERTVITKQSTPNRAGRAKGSSNKSKTH-------------------KTNTVDLRSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARITGNISPPVSNPFPSSTTSMVDILKAYKLFVHTCPIYVTDYFAANKSI 323          
BLAST of FC875634 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.860e-19
Identity = 85/253 (33.60%), Postives = 124/253 (49.01%), Query Frame = 1
Query:    1 VPNLHGEIESLLK-REGVNFAPKVSLPKHGEGVLLSSADDGRHHSSYGS-------RGRKNDQREDSDYLEQGRRSKLSAVSLAVSDVKLERFDEVLLRHCETKKDXXXXXXXXXXXXNGSSRKLQQNGQXXXXXXXXXXXXXXXXXXXEVVDLRGLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPM-HTHISCRTS-----AADILKAYQMSLSAWPFIRMSYHFA 717
            V ++  + ES L+ ++GV  A K  LP   + V+    +      S          R +KN +R+     E+ R SK  A ++  S V  + FD+VLL   E                  SS+ + + G+                   +VVD R LLT CAQA+++ D+ TA E L QIR+ SS  GD  QRLAH FA+ALEARL G+  PM  T+ +  TS     AAD ++AY++ LS+ PF+ + Y F+
Sbjct:  117 VKSMFSDAESALQFKKGVEEASKF-LPNSDQWVINLDIERSERRDSVKEEMGLDQLRVKKNHERD----FEEVRSSKQFASNVEDSKVT-DMFDKVLLLDGECDPQTLLDSEIQAIR---SSKNIGEKGKKKKKKKS------------QVVDFRTLLTHCAQAISTGDKTTALEFLLQIRQQSSPLGDAGQRLAHCFANALEARLQGSTGPMIQTYYNALTSSLKDTAADTIRAYRVYLSSSPFVTLMYFFS 348          
The following BLAST results are available for this feature:
BLAST of FC875634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SCL30_ARATH1.518e-2744.10Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
SCL14_ARATH9.837e-2740.67Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCL33_ARATH4.133e-2533.88Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH5.052e-2338.50Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL31_ARATH2.507e-2240.00Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
SCL11_ARATH5.586e-2236.82Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL34_ARATH9.860e-1933.60Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC31401B04EF CTVClemen1 Citrus clementina cDNA clone C31401B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875634 ID=FC875634; Name=FC875634; organism=Citrus clementina; type=EST; length=767bp
GTGCCAAACTTACACGGTGAGATAGAGTCCCTTTTAAAAAGGGAGGGGGT
TAATTTTGCTCCGAAGGTCAGCCTACCAAAGCACGGAGAGGGGGTTCTCT
TGAGTTCAGCAGACGACGGGAGGCACCATTCATCTTATGGATCAAGAGGA
AGGAAAAATGATCAGCGCGAGGATAGCGATTATCTTGAACAAGGGAGGAG
GAGCAAGCTTTCAGCGGTTTCTCTTGCAGTGTCTGATGTGAAATTAGAGA
GGTTTGATGAAGTATTGCTCCGCCACTGCGAGACCAAGAAAGATGAATCC
GAACCATATTCTTCTTACCGAGAGTCAGAAAATGGATCAAGCAGAAAACT
GCAGCAGAATGGGCAATCAAAAGGGTCTACTGGTGGAACAACACGCGGAA
GGAAAAGGGGTGACAAAAGAAAAGAGGTTGTAGATTTGCGGGGTCTTCTA
ACTCTATGTGCACAGGCTGTGGCTAGCAATGACCAAAGGACTGCAAATGA
ACAACTAAAGCAGATTAGGCGGCACTCTTCTGCTTTTGGTGATGGAACTC
AAAGATTGGCTCATTACTTTGCTGACGCCCTCGAGGCACGCCTTCTTGGC
GCTCACACACCAATGCATACACACATAAGTTGCCGGACATCTGCCGCAGA
TATTCTAAAAGCTTACCAGATGTCTCTTTCGGCGTGGCCCTTTATCAGGA
TGTCATATCATTTCGCGAACCAGACGATTAAAAACTAGCAGAGAAAGCAC
AGGCTTCCATCATGATT
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