FC875643

Overview
NameFC875643
Unique NameFC875643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875643_ssr75 microsatellite FC875643_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC875643 vs. ExPASy Swiss-Prot
Match: AAH_ARATH (Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 3.862e-61
Identity = 128/205 (62.44%), Postives = 156/205 (76.10%), Query Frame = 3
Query:   75 LSLSPSLSGQPATQDSAMAISSSILFCYLLFSLISNVASSFMYSDDRRDVLFPQILKEEAVTRLDELGKVSDANGYLQRTFMSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVS 689
            L+LS S S   ++ DS+ + SS             +++     ++  +  L   IL++EAV RL ELG+VSDA  +L+RTFMSPAS+RA  LIR WMEDAGL TWVD++GNVHGRVE  N S+QALLIGSH+DTV+DAG +DGSLGII+AISALKVLK  G+LG+LKRPVEVIAFSDEEGVRFQSTFLGSAALAGI+PVS L V+
Sbjct:   50 LALSSSSSSSSSSSDSSSSSSS-------------HISLGIGETEGTKHDLHQAILRDEAVARLHELGQVSDAATHLERTFMSPASIRAIPLIRGWMEDAGLSTWVDYMGNVHGRVEPKNGSSQALLIGSHMDTVIDAGKYDGSLGIISAISALKVLKIDGRLGELKRPVEVIAFSDEEGVRFQSTFLGSAALAGIMPVSRLEVT 241          
BLAST of FC875643 vs. ExPASy Swiss-Prot
Match: AMAB2_BACST (N-carbamoyl-L-amino acid hydrolase OS=Bacillus stearothermophilus GN=amaB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  261 RLDELGKVS-DANGYLQRTFMSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL 680
            RL ELG+V    +G + R   +    RA +L+  +M +AGL  + D  GN+ GR EG N  A  +L+GSHLD+V + G FDG LG++  +  ++ +   G +     P+EV+AF+DEEG RF+   +GS A+AG LP  AL
Sbjct:   10 RLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVV--THHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEAL 148          
BLAST of FC875643 vs. ExPASy Swiss-Prot
Match: AMAB1_BACST (N-carbamoyl-L-amino acid hydrolase OS=Bacillus stearothermophilus GN=amaB PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  261 RLDELGKVS-DANGYLQRTFMSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL 680
            RL ELG+V    +G + R   +    RA +L+  +M +AGL  + D  GN+ GR EG N  A  +L+GSHLD+V + G FDG LG++  +  ++ +   G +     P+EV+AF+DEEG RF+   +GS A+AG LP  AL
Sbjct:   10 RLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVV--THHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEAL 148          
BLAST of FC875643 vs. ExPASy Swiss-Prot
Match: HYUC_PSESN (Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671) GN=hyuC PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  255 VTRLDELGKVSDANGYLQRTFMSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAG 659
            + +L E+GK  D    +QR  +S     A  L+ +WM +AGL    DH GN+ GR EG   S  +++IGSH+D+V + G FDG +G++  I  +  +     +   +  +EV+AF +EEG RF     GS  + G
Sbjct:   15 IEQLGEIGKTKDKG--VQRLALSKEDREATLLVSEWMREAGLTVTHDHFGNLIGRKEGETPSLPSVMIGSHIDSVRNGGKFDGVIGVLAGIEIVHAISEANVVH--EHSIEVVAFCEEEGSRFNDGLFGSRGMVG 145          
BLAST of FC875643 vs. ExPASy Swiss-Prot
Match: ALLC_BACSU (Allantoate amidohydrolase OS=Bacillus subtilis GN=pucF PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 44/126 (34.92%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  285 SDANGYLQRTFMSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGI 662
            + A+G + R   +   + A   ++  M   GL T  D +GNV GR+ G  +  + ++ GSH+DTV++ G +DG+ G++ A+ ALK LK T   G  K+ +E ++  +EEG RF  T+ GS  + G+
Sbjct:   24 ASADGGVTRLLYTKEWMDAQLAVKTEMSSFGLETRFDDVGNVFGRLSGTQSPDEVIVTGSHIDTVINGGKYDGAYGVLAAMLALKQLKET--YGAPKKTLEAVSLCEEEGSRFPMTYWGSGNMTGV 147          
BLAST of FC875643 vs. ExPASy Swiss-Prot
Match: ALLC_ECOLI (Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 50/139 (35.97%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  246 EEAVTRLDELGKVSDANGYLQRTFMSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGI 662
            EE +  L   G  +D  G + R   SP  +      ++ M  +GL T  D +GN++GR+ G     + +L GSH+DTVV+ G  DG  G + A  A+  LK+  + G   R VEV+A ++EEG RF   F GS  + G+
Sbjct:   10 EETLPWLSSFG--ADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKT--QYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGL 144          
The following BLAST results are available for this feature:
BLAST of FC875643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AAH_ARATH3.862e-6162.44Allantoate deiminase, chloroplastic OS=Arabidopsis... [more]
AMAB2_BACST5.451e-2341.13N-carbamoyl-L-amino acid hydrolase OS=Bacillus ste... [more]
AMAB1_BACST5.451e-2341.13N-carbamoyl-L-amino acid hydrolase OS=Bacillus ste... [more]
HYUC_PSESN6.896e-1835.56Hydantoin utilization protein C OS=Pseudomonas sp.... [more]
ALLC_BACSU3.784e-1634.92Allantoate amidohydrolase OS=Bacillus subtilis GN=... [more]
ALLC_ECOLI3.203e-1535.97Allantoate amidohydrolase OS=Escherichia coli (str... [more]
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Properties
Property NameValue
Genbank descriptionC31401C02EF CTVClemen1 Citrus clementina cDNA clone C31401C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875643 ID=FC875643; Name=FC875643; organism=Citrus clementina; type=EST; length=689bp
GAGAATCAAGTGGTGCGTCTGCTTGTGGCTGCTCTGCTGCTCCGCTCTTT
GGCTTGCGTGTTTGTTTTTGCAAGCTCTCTCTCTCTCCCTCTCTCTCAGG
GCAGCCAGCCACTCAGGACTCAGCCATGGCAATTTCATCCTCCATTTTGT
TTTGTTATTTGCTTTTCTCTCTTATATCAAACGTTGCTTCCTCGTTCATG
TATTCTGATGATAGAAGGGACGTTTTGTTTCCACAAATCTTAAAGGAAGA
GGCAGTGACAAGGCTCGATGAGCTCGGCAAGGTGAGTGATGCTAATGGCT
ATCTTCAGAGGACATTCATGAGCCCTGCTTCAGTGAGAGCTGGAAATCTC
ATTCGTCAGTGGATGGAGGATGCTGGTTTGAGAACGTGGGTGGACCATTT
GGGCAATGTACACGGTCGGGTTGAGGGATTGAATGCAAGTGCTCAGGCTC
TGTTGATTGGCTCTCATTTGGATACTGTTGTTGATGCTGGAATCTTTGAT
GGGTCATTAGGTATAATCACTGCAATATCTGCATTGAAGGTCTTGAAGAG
CACTGGGAAGTTAGGAAAACTAAAACGGCCGGTTGAGGTTATTGCATTTA
GTGATGAGGAGGGGGTCAGATTTCAATCTACTTTCTTAGGGAGTGCTGCT
TTAGCTGGTATTTTACCAGTTTCGGCATTGCGGGTATCG
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