FC875646

Overview
NameFC875646
Unique NameFC875646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig695 contig Ccv1_Contig695:691..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP24_ARATH (Serine carboxypeptidase 24 OS=Arabidopsis thaliana GN=SCPL24 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.741e-23
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS 246
            GDTD  VPVT++R+S++ LNLPV+T WYPWYTD +VGG+   YKG+ F TVRGAGH VP  +P+RALI+  SFL G   P S
Sbjct:  383 GDTDSVVPVTATRFSLSHLNLPVKTRWYPWYTDNQVGGWTEVYKGLTFATVRGAGHEVPLFEPKRALILFRSFLAGKELPRS 464          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP31_ARATH (Serine carboxypeptidase-like 31 OS=Arabidopsis thaliana GN=SCPL31 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.284e-22
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS 246
            GDTDGRVPV ++RYS+NAL LP++TAW PWY + +V G++  Y+G+ F T RGAGH VP  +P  +L   S+FL G+ PP S
Sbjct:  383 GDTDGRVPVLATRYSLNALELPIKTAWRPWYHEKQVSGWLQEYEGLTFATFRGAGHAVPCFKPSSSLAFFSAFLSGVPPPPS 464          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: CBP22_HORVU (Serine carboxypeptidase II-2 (Fragment) OS=Hordeum vulgare GN=CXP;2-2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.554e-22
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTD-GEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GDTD  +PVTS+RYSI+AL LP  T W+ WY D GEVGG+  GYKG+ F TVRGAGH VP ++P++AL +I SFL G
Sbjct:  347 GDTDAVIPVTSTRYSIDALKLPTVTPWHAWYDDDGEVGGWTQGYKGLNFVTVRGAGHEVPLHRPKQALTLIKSFLAG 423          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP32_ARATH (Serine carboxypeptidase-like 32 OS=Arabidopsis thaliana GN=SCPL32 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.128e-21
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS 246
            GDTDGRVPV S+RY IN L LP++TAW PWY + +V G+   Y+G+ F T RGAGH VP+ +P  +L   S+FL G+ PP S
Sbjct:  381 GDTDGRVPVLSTRYCINKLELPIKTAWRPWYHETQVSGWFQEYEGLTFATFRGAGHDVPSFKPSESLAFFSAFLNGVPPPLS 462          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP40_ARATH (Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.631e-21
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKG-VIFTTVRGAGHMVPTNQPQRALIMISSFLEGI-LPPSS 246
            GDTDGR+PVTS++YS+  +NL  +TAW+PWY  GEVGGY   YKG + F TVRGAGH VP+ QP+R+L +   FL    LP +S
Sbjct:  417 GDTDGRIPVTSTKYSLKKMNLTAKTAWHPWYLGGEVGGYTEEYKGKLTFATVRGAGHQVPSFQPKRSLSLFIHFLNDTPLPDTS 500          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP23_ARATH (Putative serine carboxypeptidase-like 23 OS=Arabidopsis thaliana GN=SCPL23 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.631e-21
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS 246
            GDTD  VPVT +R +++ LNLPV+T WYPWY++ +VGG+   Y+G+ F T+RGAGH VP  QP+RAL ++ SFL G   P S
Sbjct:  372 GDTDAVVPVTGTRLALSKLNLPVKTPWYPWYSEKQVGGWTEVYEGLTFATIRGAGHEVPVLQPERALTLLRSFLAGKELPRS 453          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: CBP23_HORVU (Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.631e-21
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTD----GEVGGYVLGYKG-VIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GDTDGRVPVTSSR S+N L LPV   W PW++     GEVGGY++ YKG +   TVRGAGH VP+ QP+RAL+++ +FL G
Sbjct:  424 GDTDGRVPVTSSRLSVNQLQLPVAAKWRPWFSSTKGAGEVGGYIVQYKGDLSLVTVRGAGHEVPSYQPRRALVLVQNFLAG 504          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: CBP2_WHEAT (Serine carboxypeptidase 2 OS=Triticum aestivum GN=CBP2 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.088e-21
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GDTD  VP+T++RYSI AL LP  T+WYPWY D EVGG+   YKG+   +VRGAGH VP ++P++AL++   FL+G
Sbjct:  358 GDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQG 433          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP22_ARATH (Serine carboxypeptidase-like 22 OS=Arabidopsis thaliana GN=SCPL22 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.056e-20
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GDTD  +PVT++RYS+  LNL V+T WYPWY+  +VGG    Y+G+ F TVRGAGH VP  QPQ ALI++ SFL G
Sbjct:  382 GDTDSVIPVTATRYSLGKLNLRVKTRWYPWYSGNQVGGRTEVYEGLTFVTVRGAGHEVPFFQPQSALILLRSFLAG 457          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP30_ARATH (Putative serine carboxypeptidase-like 30 OS=Arabidopsis thaliana GN=SCPL30 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.073e-20
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS*EKTS 261
            GDTDG +PV  +RYS+NAL LP++TAW PWY + +V G+V  Y G+ F T RGAGH VP+ +P  +L  IS+F++G+   SS  +T+
Sbjct:  402 GDTDGCIPVLGTRYSLNALGLPIKTAWRPWYHEKQVSGWVQEYDGLTFATFRGAGHTVPSFKPSSSLAFISAFVKGVPLSSSRVETN 488          
The following BLAST results are available for this feature:
BLAST of FC875646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SCP24_ARATH1.741e-2360.98Serine carboxypeptidase 24 OS=Arabidopsis thaliana... [more]
SCP31_ARATH3.284e-2254.88Serine carboxypeptidase-like 31 OS=Arabidopsis tha... [more]
CBP22_HORVU9.554e-2262.34Serine carboxypeptidase II-2 (Fragment) OS=Hordeum... [more]
SCP32_ARATH2.128e-2154.88Serine carboxypeptidase-like 32 OS=Arabidopsis tha... [more]
SCP40_ARATH3.631e-2157.14Serine carboxypeptidase-like 40 OS=Arabidopsis tha... [more]
SCP23_ARATH3.631e-2154.88Putative serine carboxypeptidase-like 23 OS=Arabid... [more]
CBP23_HORVU3.631e-2159.26Serine carboxypeptidase II-3 OS=Hordeum vulgare GN... [more]
CBP2_WHEAT8.088e-2156.58Serine carboxypeptidase 2 OS=Triticum aestivum GN=... [more]
SCP22_ARATH1.056e-2059.21Serine carboxypeptidase-like 22 OS=Arabidopsis tha... [more]
SCP30_ARATH3.073e-2050.57Putative serine carboxypeptidase-like 30 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC31401C05EF CTVClemen1 Citrus clementina cDNA clone C31401C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875646 ID=FC875646; Name=FC875646; organism=Citrus clementina; type=EST; length=403bp
GGTGACACAGATGGGCGAGTTCCAGTGACATCCTCTAGATACTCCATCAA
TGCTCTGAACCTTCCGGTTGAAACTGCTTGGTACCCATGGTACACTGATG
GTGAGGTTGGTGGATATGTGCTCGGGTACAAGGGAGTGATATTCACTACT
GTTAGAGGGGCAGGGCATATGGTTCCTACTAACCAGCCACAGCGAGCTCT
CATCATGATCTCATCTTTCCTCGAGGGGATACTTCCTCCCTCCTCTTAAG
AAAAGACATCGAAAACTGTTATCCCAGCTTGACATATTAGTTATTTCGCA
ATTTGAAATTTCAGTTCCATTATGCATTCTGAGCACGAAGAGTTCCTATG
CTATTATACTTGTATGTCCTAAATAATAGTAACCAGAATAAATGAATTAT
CNT
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